ATF2_HUMAN.H11MO.2.C motif - HOmo sapiens COmprehensive MOdel COllection

Check the newest release v12

Model info

Transcription factor

ATF2
(GeneCards)

Model

ATF2_HUMAN.H11MO.2.C

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv11

Model length

11

Quality

C

Motif rank

2

Consensus

RRTGACGTCAb

Best auROC (human)

0.708

Best auROC (mouse)

0.8

Peak sets in benchmark (human)

8

Peak sets in benchmark (mouse)

4

Aligned words

385

TF family

Jun-related factors {1.1.1}

TF subfamily

ATF-2-like factors {1.1.1.3}

HGNC

EntrezGene

GeneID:1386
(SSTAR profile)

UniProt ID

UniProt AC

P15336
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	-0.035320000000000004
0.0005	1.00691
0.0001	4.28451

GTEx tissue expression atlas

ATF2 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

PCM

	A	C	G	T
01	123.0	33.0	206.0	19.0
02	194.0	2.0	183.0	2.0
03	0.0	0.0	0.0	381.0
04	0.0	0.0	381.0	0.0
05	381.0	0.0	0.0	0.0
06	0.0	379.0	1.0	1.0
07	0.0	0.0	381.0	0.0
08	0.0	0.0	0.0	381.0
09	72.0	309.0	0.0	0.0
10	380.0	0.0	1.0	0.0
11	17.0	177.0	136.0	51.0

PWM

	A	C	G	T
01	0.252	-1.031	0.763	-1.552
02	0.704	-3.323	0.646	-3.323
03	-4.176	-4.176	-4.176	1.375
04	-4.176	-4.176	1.375	-4.176
05	1.375	-4.176	-4.176	-4.176
06	-4.176	1.369	-3.661	-3.661
07	-4.176	-4.176	1.375	-4.176
08	-4.176	-4.176	-4.176	1.375
09	-0.275	1.166	-4.176	-4.176
10	1.372	-4.176	-3.661	-4.176
11	-1.655	0.613	0.352	-0.611