We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorATF2
(GeneCards)
ModelATF2_HUMAN.H11MO.2.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
C
Motif rank
2
ConsensusRRTGACGTCAb
Best auROC (human)0.708
Best auROC (mouse)0.8
Peak sets in benchmark (human)8
Peak sets in benchmark (mouse)4
Aligned words385
TF familyJun-related factors {1.1.1}
TF subfamilyATF-2-like factors {1.1.1.3}
HGNCHGNC:784
EntrezGeneGeneID:1386
(SSTAR profile)
UniProt IDATF2_HUMAN
UniProt ACP15336
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 -0.035320000000000004
0.0005 1.00691
0.0001 4.28451
GTEx tissue expression atlas ATF2 expression
ReMap ChIP-seq dataset list ATF2 datasets
Motifs in JASPAR
PCM
ACGT
01123.033.0206.019.0
02194.02.0183.02.0
030.00.00.0381.0
040.00.0381.00.0
05381.00.00.00.0
060.0379.01.01.0
070.00.0381.00.0
080.00.00.0381.0
0972.0309.00.00.0
10380.00.01.00.0
1117.0177.0136.051.0
PWM
ACGT
010.252-1.0310.763-1.552
020.704-3.3230.646-3.323
03-4.176-4.176-4.1761.375
04-4.176-4.1761.375-4.176
051.375-4.176-4.176-4.176
06-4.1761.369-3.661-3.661
07-4.176-4.1761.375-4.176
08-4.176-4.176-4.1761.375
09-0.2751.166-4.176-4.176
101.372-4.176-3.661-4.176
11-1.6550.6130.352-0.611