Transcription factor | Atf2 | ||||||||
Model | ATF2_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 13 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | ndRTGAbSWMAbn | ||||||||
Best auROC (human) | 0.765 | ||||||||
Best auROC (mouse) | 0.855 | ||||||||
Peak sets in benchmark (human) | 8 | ||||||||
Peak sets in benchmark (mouse) | 4 | ||||||||
Aligned words | 508 | ||||||||
TF family | Jun-related factors {1.1.1} | ||||||||
TF subfamily | ATF-2-like factors {1.1.1.3} | ||||||||
MGI | MGI:109349 | ||||||||
EntrezGene | GeneID:102641666; 11909 (SSTAR profile) | ||||||||
UniProt ID | ATF2_MOUSE | ||||||||
UniProt AC | P16951 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Atf2 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 56.0 | 2.0 | 46.0 | 19.0 | 56.0 | 8.0 | 37.0 | 44.0 | 40.0 | 10.0 | 71.0 | 24.0 | 18.0 | 1.0 | 61.0 | 7.0 |
02 | 79.0 | 7.0 | 84.0 | 0.0 | 9.0 | 2.0 | 9.0 | 1.0 | 98.0 | 10.0 | 104.0 | 3.0 | 34.0 | 1.0 | 59.0 | 0.0 |
03 | 10.0 | 6.0 | 2.0 | 202.0 | 0.0 | 0.0 | 0.0 | 20.0 | 7.0 | 4.0 | 2.0 | 243.0 | 0.0 | 0.0 | 1.0 | 3.0 |
04 | 0.0 | 2.0 | 15.0 | 0.0 | 0.0 | 0.0 | 10.0 | 0.0 | 1.0 | 0.0 | 4.0 | 0.0 | 5.0 | 4.0 | 459.0 | 0.0 |
05 | 6.0 | 0.0 | 0.0 | 0.0 | 5.0 | 0.0 | 0.0 | 1.0 | 479.0 | 0.0 | 4.0 | 5.0 | 0.0 | 0.0 | 0.0 | 0.0 |
06 | 19.0 | 247.0 | 96.0 | 128.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 | 0.0 | 1.0 | 0.0 | 1.0 | 2.0 | 2.0 | 1.0 |
07 | 3.0 | 2.0 | 16.0 | 2.0 | 21.0 | 31.0 | 189.0 | 8.0 | 7.0 | 22.0 | 65.0 | 5.0 | 1.0 | 4.0 | 116.0 | 8.0 |
08 | 16.0 | 6.0 | 3.0 | 7.0 | 13.0 | 1.0 | 0.0 | 45.0 | 48.0 | 33.0 | 5.0 | 300.0 | 7.0 | 8.0 | 0.0 | 8.0 |
09 | 48.0 | 31.0 | 4.0 | 1.0 | 19.0 | 23.0 | 1.0 | 5.0 | 0.0 | 8.0 | 0.0 | 0.0 | 48.0 | 285.0 | 15.0 | 12.0 |
10 | 91.0 | 3.0 | 16.0 | 5.0 | 327.0 | 5.0 | 10.0 | 5.0 | 8.0 | 4.0 | 7.0 | 1.0 | 13.0 | 1.0 | 3.0 | 1.0 |
11 | 23.0 | 68.0 | 113.0 | 235.0 | 2.0 | 0.0 | 1.0 | 10.0 | 7.0 | 9.0 | 8.0 | 12.0 | 3.0 | 0.0 | 5.0 | 4.0 |
12 | 6.0 | 13.0 | 13.0 | 3.0 | 24.0 | 17.0 | 18.0 | 18.0 | 36.0 | 33.0 | 35.0 | 23.0 | 35.0 | 93.0 | 84.0 | 49.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.578 | -2.584 | 0.383 | -0.49 | 0.578 | -1.328 | 0.167 | 0.339 | 0.244 | -1.114 | 0.814 | -0.26 | -0.543 | -3.126 | 0.663 | -1.454 |
02 | 0.92 | -1.454 | 0.981 | -4.4 | -1.215 | -2.584 | -1.215 | -3.126 | 1.135 | -1.114 | 1.194 | -2.234 | 0.083 | -3.126 | 0.63 | -4.4 |
03 | -1.114 | -1.6 | -2.584 | 1.856 | -4.4 | -4.4 | -4.4 | -0.439 | -1.454 | -1.975 | -2.584 | 2.04 | -4.4 | -4.4 | -3.126 | -2.234 |
04 | -4.4 | -2.584 | -0.721 | -4.4 | -4.4 | -4.4 | -1.114 | -4.4 | -3.126 | -4.4 | -1.975 | -4.4 | -1.77 | -1.975 | 2.676 | -4.4 |
05 | -1.6 | -4.4 | -4.4 | -4.4 | -1.77 | -4.4 | -4.4 | -3.126 | 2.718 | -4.4 | -1.975 | -1.77 | -4.4 | -4.4 | -4.4 | -4.4 |
06 | -0.49 | 2.057 | 1.114 | 1.401 | -4.4 | -4.4 | -4.4 | -4.4 | -2.234 | -4.4 | -3.126 | -4.4 | -3.126 | -2.584 | -2.584 | -3.126 |
07 | -2.234 | -2.584 | -0.658 | -2.584 | -0.392 | -0.008 | 1.789 | -1.328 | -1.454 | -0.346 | 0.726 | -1.77 | -3.126 | -1.975 | 1.303 | -1.328 |
08 | -0.658 | -1.6 | -2.234 | -1.454 | -0.86 | -3.126 | -4.4 | 0.361 | 0.425 | 0.054 | -1.77 | 2.251 | -1.454 | -1.328 | -4.4 | -1.328 |
09 | 0.425 | -0.008 | -1.975 | -3.126 | -0.49 | -0.302 | -3.126 | -1.77 | -4.4 | -1.328 | -4.4 | -4.4 | 0.425 | 2.199 | -0.721 | -0.938 |
10 | 1.061 | -2.234 | -0.658 | -1.77 | 2.337 | -1.77 | -1.114 | -1.77 | -1.328 | -1.975 | -1.454 | -3.126 | -0.86 | -3.126 | -2.234 | -3.126 |
11 | -0.302 | 0.771 | 1.276 | 2.007 | -2.584 | -4.4 | -3.126 | -1.114 | -1.454 | -1.215 | -1.328 | -0.938 | -2.234 | -4.4 | -1.77 | -1.975 |
12 | -1.6 | -0.86 | -0.86 | -2.234 | -0.26 | -0.599 | -0.543 | -0.543 | 0.14 | 0.054 | 0.112 | -0.302 | 0.112 | 1.082 | 0.981 | 0.445 |