ATF6A_HUMAN.H11MO.0.B motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

ATF6
(GeneCards)

Model

ATF6A_HUMAN.H11MO.0.B

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

12

Quality

B

Motif rank

0

Consensus

vKSSTGACGTGG

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

20

TF family

CREB-related factors {1.1.7}

TF subfamily

ATF-6 factors {1.1.7.3}

HGNC

EntrezGene

GeneID:22926
(SSTAR profile)

UniProt ID

UniProt AC

P18850
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	3.07294
0.0005	3.9422949999999997
0.0001	5.72504

GTEx tissue expression atlas

ATF6 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

PCM

	A	C	G	T
01	3.692	3.692	11.692	0.923
02	0.0	4.308	6.462	9.231
03	0.0	5.231	12.0	2.769
04	1.846	8.0	9.231	0.923
05	0.0	0.615	0.0	19.385
06	0.0	0.923	19.077	0.0
07	18.462	0.923	0.0	0.615
08	0.0	20.0	0.0	0.0
09	0.0	0.0	20.0	0.0
10	0.0	0.0	0.0	20.0
11	0.0	1.846	18.154	0.0
12	1.846	0.0	18.154	0.0

PWM

	A	C	G	T
01	-0.258	-0.258	0.772	-1.235
02	-2.038	-0.128	0.227	0.552
03	-2.038	0.039	0.796	-0.491
04	-0.795	0.42	0.552	-1.235
05	-2.038	-1.438	-2.038	1.253
06	-2.038	-1.235	1.238	-2.038
07	1.206	-1.235	-2.038	-1.438
08	-2.038	1.283	-2.038	-2.038
09	-2.038	-2.038	1.283	-2.038
10	-2.038	-2.038	-2.038	1.283
11	-2.038	-0.795	1.19	-2.038
12	-0.795	-2.038	1.19	-2.038