We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorATOH1
(GeneCards)
ModelATOH1_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
B
Motif rank
0
ConsensusndnRRCAGMTGSn
Best auROC (human)0.788
Best auROC (mouse)0.996
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)4
Aligned words501
TF familyTal-related factors {1.2.3}
TF subfamilyNeurogenin / Atonal-like factors {1.2.3.4}
HGNCHGNC:797
EntrezGeneGeneID:474
(SSTAR profile)
UniProt IDATOH1_HUMAN
UniProt ACQ92858
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.027465
0.0005 9.713135
0.0001 15.098135
GTEx tissue expression atlas ATOH1 expression
ReMap ChIP-seq dataset list ATOH1 datasets
Motifs in JASPAR
MA0461.1 (Atoh1; Mus musculus)
MA0461.2 (Atoh1; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0146.010.062.012.052.014.019.024.080.08.084.014.017.08.040.010.0
0243.031.088.033.06.014.02.018.038.052.065.050.03.016.029.012.0
0332.06.049.03.088.07.016.02.0104.011.061.08.026.05.082.00.0
0479.041.0130.00.024.02.03.00.0105.038.065.00.04.07.02.00.0
050.0211.01.00.00.088.00.00.01.0198.01.00.00.00.00.00.0
061.00.00.00.0497.00.00.00.02.00.00.00.00.00.00.00.0
070.04.0480.016.00.00.00.00.00.00.00.00.00.00.00.00.0
080.00.00.00.03.01.00.00.0292.0172.015.01.016.00.00.00.0
095.04.00.0302.09.00.00.0164.00.00.00.015.00.00.00.01.0
100.00.014.00.00.00.04.00.00.00.00.00.00.00.0478.04.0
110.00.00.00.00.00.00.00.011.070.0376.039.00.00.04.00.0
121.06.03.01.012.014.00.044.056.0136.092.096.03.022.010.04.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.383-1.1140.679-0.9380.504-0.788-0.49-0.260.932-1.3280.981-0.788-0.599-1.3280.244-1.114
020.316-0.0081.0270.054-1.6-0.788-2.584-0.5430.1930.5040.7260.465-2.234-0.658-0.074-0.938
030.023-1.60.445-2.2341.027-1.454-0.658-2.5841.194-1.0220.663-1.328-0.181-1.770.957-4.4
040.920.2691.416-4.4-0.26-2.584-2.234-4.41.2030.1930.726-4.4-1.975-1.454-2.584-4.4
05-4.41.899-3.126-4.4-4.41.027-4.4-4.4-3.1261.836-3.126-4.4-4.4-4.4-4.4-4.4
06-3.126-4.4-4.4-4.42.755-4.4-4.4-4.4-2.584-4.4-4.4-4.4-4.4-4.4-4.4-4.4
07-4.4-1.9752.72-0.658-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
08-4.4-4.4-4.4-4.4-2.234-3.126-4.4-4.42.2241.695-0.721-3.126-0.658-4.4-4.4-4.4
09-1.77-1.975-4.42.257-1.215-4.4-4.41.648-4.4-4.4-4.4-0.721-4.4-4.4-4.4-3.126
10-4.4-4.4-0.788-4.4-4.4-4.4-1.975-4.4-4.4-4.4-4.4-4.4-4.4-4.42.716-1.975
11-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-1.0220.82.4760.219-4.4-4.4-1.975-4.4
12-3.126-1.6-2.234-3.126-0.938-0.788-4.40.3390.5781.4611.0721.114-2.234-0.346-1.114-1.975