We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorAtoh1
ModelATOH1_MOUSE.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
B
Motif rank
0
ConsensusRRCAGMTGK
Best auROC (human)0.759
Best auROC (mouse)0.988
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)4
Aligned words502
TF familyTal-related factors {1.2.3}
TF subfamilyNeurogenin / Atonal-like factors {1.2.3.4}
MGIMGI:104654
EntrezGeneGeneID:11921
(SSTAR profile)
UniProt IDATOH1_MOUSE
UniProt ACP48985
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.22513
0.0005 5.28277
0.0001 7.83985
GTEx tissue expression atlas Atoh1 expression
Motifs in JASPAR
MA0461.1 (Atoh1; Mus musculus)
MA0461.2 (Atoh1; Mus musculus)
PCM
ACGT
01267.021.0189.023.0
02162.077.0261.00.0
031.0498.01.00.0
04499.00.00.01.0
050.04.0487.09.0
06293.0190.017.00.0
079.03.01.0487.0
081.00.0495.04.0
0916.055.0361.068.0
PWM
ACGT
010.752-1.7250.409-1.64
020.256-0.4770.73-4.4
03-3.9031.373-3.903-4.4
041.375-4.4-4.4-3.903
05-4.4-3.1261.351-2.484
060.8450.415-1.92-4.4
07-2.484-3.325-3.9031.351
08-3.903-4.41.367-3.126
09-1.975-0.8051.053-0.599