Model info
| Transcription factor | Atoh1 | ||||||||
| Model | ATOH1_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RRCAGMTGK | ||||||||
| Best auROC (human) | 0.759 | ||||||||
| Best auROC (mouse) | 0.988 | ||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 502 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Neurogenin / Atonal-like factors {1.2.3.4} | ||||||||
| MGI | MGI:104654 | ||||||||
| EntrezGene | GeneID:11921 (SSTAR profile) | ||||||||
| UniProt ID | ATOH1_MOUSE | ||||||||
| UniProt AC | P48985 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Atoh1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 267.0 | 21.0 | 189.0 | 23.0 |
| 02 | 162.0 | 77.0 | 261.0 | 0.0 |
| 03 | 1.0 | 498.0 | 1.0 | 0.0 |
| 04 | 499.0 | 0.0 | 0.0 | 1.0 |
| 05 | 0.0 | 4.0 | 487.0 | 9.0 |
| 06 | 293.0 | 190.0 | 17.0 | 0.0 |
| 07 | 9.0 | 3.0 | 1.0 | 487.0 |
| 08 | 1.0 | 0.0 | 495.0 | 4.0 |
| 09 | 16.0 | 55.0 | 361.0 | 68.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.752 | -1.725 | 0.409 | -1.64 |
| 02 | 0.256 | -0.477 | 0.73 | -4.4 |
| 03 | -3.903 | 1.373 | -3.903 | -4.4 |
| 04 | 1.375 | -4.4 | -4.4 | -3.903 |
| 05 | -4.4 | -3.126 | 1.351 | -2.484 |
| 06 | 0.845 | 0.415 | -1.92 | -4.4 |
| 07 | -2.484 | -3.325 | -3.903 | 1.351 |
| 08 | -3.903 | -4.4 | 1.367 | -3.126 |
| 09 | -1.975 | -0.805 | 1.053 | -0.599 |