We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorBARX1
(GeneCards)
ModelBARX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
D
Motif rank
0
ConsensusnWMAKKSYTThh
Best auROC (human)0.608
Best auROC (mouse)0.831
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)2
Aligned words461
TF familyNK-related factors {3.1.2}
TF subfamilyBARX {3.1.2.2}
HGNCHGNC:955
EntrezGeneGeneID:56033
(SSTAR profile)
UniProt IDBARX1_HUMAN
UniProt ACQ9HBU1
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.000005
0.0005 6.774345
0.0001 8.319975
GTEx tissue expression atlas BARX1 expression
ReMap ChIP-seq dataset list BARX1 datasets
Motifs in JASPAR
MA0875.1 (BARX1; Homo sapiens)
PCM
ACGT
0146.0167.0124.0124.0
02168.06.020.0267.0
03349.085.021.06.0
04442.01.04.014.0
0518.021.0137.0285.0
0630.010.0197.0224.0
0741.068.0342.010.0
0821.072.015.0353.0
0929.019.015.0398.0
108.010.020.0423.0
1168.0152.033.0208.0
1271.0120.036.0234.0
PWM
ACGT
01-0.8990.3670.0720.072
020.373-2.741-1.6910.833
031.099-0.3-1.645-2.741
041.334-3.831-3.05-2.017
05-1.788-1.6450.1710.898
06-1.309-2.3150.5310.658
07-1.01-0.5191.079-2.315
08-1.645-0.463-1.9551.11
09-1.342-1.738-1.9551.23
10-2.506-2.315-1.6911.291
11-0.5190.274-1.2180.585
12-0.4760.04-1.1350.702