Model info
| Transcription factor | BARX1 (GeneCards) | ||||||||
| Model | BARX1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nWMAKKSYTThh | ||||||||
| Best auROC (human) | 0.608 | ||||||||
| Best auROC (mouse) | 0.831 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 461 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | BARX {3.1.2.2} | ||||||||
| HGNC | HGNC:955 | ||||||||
| EntrezGene | GeneID:56033 (SSTAR profile) | ||||||||
| UniProt ID | BARX1_HUMAN | ||||||||
| UniProt AC | Q9HBU1 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | BARX1 expression | ||||||||
| ReMap ChIP-seq dataset list | BARX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 46.0 | 167.0 | 124.0 | 124.0 |
| 02 | 168.0 | 6.0 | 20.0 | 267.0 |
| 03 | 349.0 | 85.0 | 21.0 | 6.0 |
| 04 | 442.0 | 1.0 | 4.0 | 14.0 |
| 05 | 18.0 | 21.0 | 137.0 | 285.0 |
| 06 | 30.0 | 10.0 | 197.0 | 224.0 |
| 07 | 41.0 | 68.0 | 342.0 | 10.0 |
| 08 | 21.0 | 72.0 | 15.0 | 353.0 |
| 09 | 29.0 | 19.0 | 15.0 | 398.0 |
| 10 | 8.0 | 10.0 | 20.0 | 423.0 |
| 11 | 68.0 | 152.0 | 33.0 | 208.0 |
| 12 | 71.0 | 120.0 | 36.0 | 234.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.899 | 0.367 | 0.072 | 0.072 |
| 02 | 0.373 | -2.741 | -1.691 | 0.833 |
| 03 | 1.099 | -0.3 | -1.645 | -2.741 |
| 04 | 1.334 | -3.831 | -3.05 | -2.017 |
| 05 | -1.788 | -1.645 | 0.171 | 0.898 |
| 06 | -1.309 | -2.315 | 0.531 | 0.658 |
| 07 | -1.01 | -0.519 | 1.079 | -2.315 |
| 08 | -1.645 | -0.463 | -1.955 | 1.11 |
| 09 | -1.342 | -1.738 | -1.955 | 1.23 |
| 10 | -2.506 | -2.315 | -1.691 | 1.291 |
| 11 | -0.519 | 0.274 | -1.218 | 0.585 |
| 12 | -0.476 | 0.04 | -1.135 | 0.702 |