We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorBarx1
ModelBARX1_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensusnbWAAKKRTTTh
Best auROC (human)0.566
Best auROC (mouse)0.832
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)2
Aligned words462
TF familyNK-related factors {3.1.2}
TF subfamilyBARX {3.1.2.2}
MGIMGI:103124
EntrezGeneGeneID:12022
(SSTAR profile)
UniProt IDBARX1_MOUSE
UniProt ACQ9ER42
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.12557
0.0005 12.806709999999999
0.0001 16.118775
GTEx tissue expression atlas Barx1 expression
Motifs in JASPAR
MA0875.1 (BARX1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
019.044.028.030.010.036.04.044.016.044.020.026.09.042.044.055.0
0213.00.00.031.050.03.00.0113.024.04.08.060.030.02.03.0120.0
03102.011.02.02.06.02.00.01.011.00.00.00.0299.014.03.08.0
04414.01.02.01.026.00.01.00.05.00.00.00.07.02.01.01.0
0528.024.087.0313.00.01.00.02.00.00.01.03.00.01.01.00.0
065.04.02.017.06.02.06.012.09.01.019.060.033.010.0173.0102.0
072.03.045.03.00.02.014.01.027.022.0130.021.021.08.0161.01.0
080.00.01.049.00.02.01.032.05.063.013.0269.00.03.03.020.0
093.00.00.02.010.07.00.051.01.00.01.016.026.08.015.0321.0
102.00.00.038.00.02.00.013.01.00.04.011.019.05.012.0354.0
117.05.04.06.01.01.00.05.05.01.07.03.0106.097.037.0176.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.1350.419-0.0280.04-1.0340.22-1.8960.419-0.5780.419-0.359-0.101-1.1350.3730.4190.64
02-0.78-4.333-4.3330.0720.546-2.155-4.3331.357-0.18-1.896-1.2480.7270.04-2.506-2.1551.417
031.255-0.942-2.506-2.506-1.52-2.506-4.333-3.05-0.942-4.333-4.333-4.3332.328-0.708-2.155-1.248
042.653-3.05-2.506-3.05-0.101-4.333-3.05-4.333-1.691-4.333-4.333-4.333-1.375-2.506-3.05-3.05
05-0.028-0.181.0962.373-4.333-3.05-4.333-2.506-4.333-4.333-3.05-2.155-4.333-3.05-3.05-4.333
06-1.691-1.896-2.506-0.519-1.52-2.506-1.52-0.858-1.135-3.05-0.410.7270.134-1.0341.7811.255
07-2.506-2.1550.441-2.155-4.333-2.506-0.708-3.05-0.064-0.2661.496-0.311-0.311-1.2481.71-3.05
08-4.333-4.333-3.050.526-4.333-2.506-3.050.104-1.6910.775-0.782.222-4.333-2.155-2.155-0.359
09-2.155-4.333-4.333-2.506-1.034-1.375-4.3330.565-3.05-4.333-3.05-0.578-0.101-1.248-0.6412.399
10-2.506-4.333-4.3330.274-4.333-2.506-4.333-0.78-3.05-4.333-1.896-0.942-0.41-1.691-0.8582.496
11-1.375-1.691-1.896-1.52-3.05-3.05-4.333-1.691-1.691-3.05-1.375-2.1551.2931.2050.2471.799