We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorBARX2
(GeneCards)
ModelBARX2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
D
Motif rank
0
ConsensushYnWTAATKR
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words14
TF familyNK-related factors {3.1.2}
TF subfamilyBARX {3.1.2.2}
HGNCHGNC:956
EntrezGeneGeneID:8538
(SSTAR profile)
UniProt IDBARX2_HUMAN
UniProt ACQ9UMQ3
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.65895
0.0005 6.349
0.0001 7.53434
GTEx tissue expression atlas BARX2 expression
ReMap ChIP-seq dataset list BARX2 datasets
Motifs in JASPAR
PCM
ACGT
011.9841.9840.9929.039
020.06.0631.9845.953
035.9531.9844.0791.984
043.9692.0940.07.937
050.00.00.014.0
0613.0080.00.9920.0
0714.00.00.00.0
080.00.00.014.0
090.00.9926.0636.945
104.9610.07.0551.984
PWM
ACGT
01-0.453-0.453-0.9240.847
02-1.8410.48-0.4530.464
030.464-0.4530.13-0.453
040.107-0.412-1.8410.726
05-1.841-1.841-1.8411.26
061.19-1.841-0.924-1.841
071.26-1.841-1.841-1.841
08-1.841-1.841-1.8411.26
09-1.841-0.9240.480.603
100.301-1.8410.618-0.453