Model info
| Transcription factor | BARX2 (GeneCards) | ||||||||
| Model | BARX2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 10 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hYnWTAATKR | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 14 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | BARX {3.1.2.2} | ||||||||
| HGNC | HGNC:956 | ||||||||
| EntrezGene | GeneID:8538 (SSTAR profile) | ||||||||
| UniProt ID | BARX2_HUMAN | ||||||||
| UniProt AC | Q9UMQ3 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | BARX2 expression | ||||||||
| ReMap ChIP-seq dataset list | BARX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.984 | 1.984 | 0.992 | 9.039 |
| 02 | 0.0 | 6.063 | 1.984 | 5.953 |
| 03 | 5.953 | 1.984 | 4.079 | 1.984 |
| 04 | 3.969 | 2.094 | 0.0 | 7.937 |
| 05 | 0.0 | 0.0 | 0.0 | 14.0 |
| 06 | 13.008 | 0.0 | 0.992 | 0.0 |
| 07 | 14.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 14.0 |
| 09 | 0.0 | 0.992 | 6.063 | 6.945 |
| 10 | 4.961 | 0.0 | 7.055 | 1.984 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.453 | -0.453 | -0.924 | 0.847 |
| 02 | -1.841 | 0.48 | -0.453 | 0.464 |
| 03 | 0.464 | -0.453 | 0.13 | -0.453 |
| 04 | 0.107 | -0.412 | -1.841 | 0.726 |
| 05 | -1.841 | -1.841 | -1.841 | 1.26 |
| 06 | 1.19 | -1.841 | -0.924 | -1.841 |
| 07 | 1.26 | -1.841 | -1.841 | -1.841 |
| 08 | -1.841 | -1.841 | -1.841 | 1.26 |
| 09 | -1.841 | -0.924 | 0.48 | 0.603 |
| 10 | 0.301 | -1.841 | 0.618 | -0.453 |