Transcription factor | Barx2 | ||||||||
Model | BARX2_MOUSE.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 10 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | hYnWTAATKR | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 14 | ||||||||
TF family | NK-related factors {3.1.2} | ||||||||
TF subfamily | BARX {3.1.2.2} | ||||||||
MGI | MGI:109617 | ||||||||
EntrezGene | GeneID:12023 (SSTAR profile) | ||||||||
UniProt ID | BARX2_MOUSE | ||||||||
UniProt AC | O08686 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Barx2 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 1.984 | 1.984 | 0.992 | 9.039 |
02 | 0.0 | 6.063 | 1.984 | 5.953 |
03 | 5.953 | 1.984 | 4.079 | 1.984 |
04 | 3.969 | 2.094 | 0.0 | 7.937 |
05 | 0.0 | 0.0 | 0.0 | 14.0 |
06 | 13.008 | 0.0 | 0.992 | 0.0 |
07 | 14.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 14.0 |
09 | 0.0 | 0.992 | 6.063 | 6.945 |
10 | 4.961 | 0.0 | 7.055 | 1.984 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.453 | -0.453 | -0.924 | 0.847 |
02 | -1.841 | 0.48 | -0.453 | 0.464 |
03 | 0.464 | -0.453 | 0.13 | -0.453 |
04 | 0.107 | -0.412 | -1.841 | 0.726 |
05 | -1.841 | -1.841 | -1.841 | 1.26 |
06 | 1.19 | -1.841 | -0.924 | -1.841 |
07 | 1.26 | -1.841 | -1.841 | -1.841 |
08 | -1.841 | -1.841 | -1.841 | 1.26 |
09 | -1.841 | -0.924 | 0.48 | 0.603 |
10 | 0.301 | -1.841 | 0.618 | -0.453 |