Model info
| Transcription factor | Batf | ||||||||
| Model | BATF_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vdWWTGASTMA | ||||||||
| Best auROC (human) | 0.914 | ||||||||
| Best auROC (mouse) | 0.93 | ||||||||
| Peak sets in benchmark (human) | 10 | ||||||||
| Peak sets in benchmark (mouse) | 20 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | B-ATF-related factors {1.1.4} | ||||||||
| TF subfamily | B-ATF {1.1.4.0.1} | ||||||||
| MGI | MGI:1859147 | ||||||||
| EntrezGene | GeneID:53314 (SSTAR profile) | ||||||||
| UniProt ID | BATF_MOUSE | ||||||||
| UniProt AC | O35284 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Batf expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 122.0 | 62.0 | 282.0 | 34.0 |
| 02 | 235.0 | 52.0 | 71.0 | 142.0 |
| 03 | 190.0 | 5.0 | 63.0 | 242.0 |
| 04 | 354.0 | 57.0 | 10.0 | 79.0 |
| 05 | 1.0 | 1.0 | 0.0 | 498.0 |
| 06 | 1.0 | 2.0 | 495.0 | 2.0 |
| 07 | 496.0 | 0.0 | 0.0 | 4.0 |
| 08 | 45.0 | 253.0 | 187.0 | 15.0 |
| 09 | 31.0 | 8.0 | 2.0 | 459.0 |
| 10 | 105.0 | 307.0 | 82.0 | 6.0 |
| 11 | 425.0 | 10.0 | 24.0 | 41.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.024 | -0.689 | 0.807 | -1.27 |
| 02 | 0.626 | -0.86 | -0.556 | 0.126 |
| 03 | 0.415 | -2.961 | -0.673 | 0.655 |
| 04 | 1.033 | -0.771 | -2.394 | -0.452 |
| 05 | -3.903 | -3.903 | -4.4 | 1.373 |
| 06 | -3.903 | -3.573 | 1.367 | -3.573 |
| 07 | 1.369 | -4.4 | -4.4 | -3.126 |
| 08 | -1.0 | 0.699 | 0.399 | -2.034 |
| 09 | -1.358 | -2.584 | -3.573 | 1.292 |
| 10 | -0.172 | 0.891 | -0.415 | -2.819 |
| 11 | 1.215 | -2.394 | -1.6 | -1.09 |