Transcription factor | BCL6 (GeneCards) | ||||||||
Model | BCL6_HUMAN.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 13 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | bdMYYTCYAGGAA | ||||||||
Best auROC (human) | 0.802 | ||||||||
Best auROC (mouse) | 0.874 | ||||||||
Peak sets in benchmark (human) | 27 | ||||||||
Peak sets in benchmark (mouse) | 11 | ||||||||
Aligned words | 500 | ||||||||
TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
TF subfamily | BCL6 factors {2.3.3.22} | ||||||||
HGNC | HGNC:1001 | ||||||||
EntrezGene | GeneID:604 (SSTAR profile) | ||||||||
UniProt ID | BCL6_HUMAN | ||||||||
UniProt AC | P41182 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | BCL6 expression | ||||||||
ReMap ChIP-seq dataset list | BCL6 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 80.0 | 128.0 | 95.0 | 197.0 |
02 | 86.0 | 63.0 | 207.0 | 144.0 |
03 | 72.0 | 319.0 | 69.0 | 40.0 |
04 | 47.0 | 112.0 | 8.0 | 333.0 |
05 | 19.0 | 95.0 | 56.0 | 330.0 |
06 | 8.0 | 21.0 | 13.0 | 458.0 |
07 | 3.0 | 415.0 | 10.0 | 72.0 |
08 | 12.0 | 217.0 | 47.0 | 224.0 |
09 | 485.0 | 7.0 | 8.0 | 0.0 |
10 | 86.0 | 1.0 | 386.0 | 27.0 |
11 | 13.0 | 35.0 | 420.0 | 32.0 |
12 | 418.0 | 22.0 | 42.0 | 18.0 |
13 | 410.0 | 27.0 | 37.0 | 26.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.439 | 0.023 | -0.271 | 0.45 |
02 | -0.368 | -0.673 | 0.5 | 0.14 |
03 | -0.543 | 0.929 | -0.584 | -1.114 |
04 | -0.958 | -0.108 | -2.584 | 0.972 |
05 | -1.818 | -0.271 | -0.788 | 0.963 |
06 | -2.584 | -1.725 | -2.163 | 1.29 |
07 | -3.325 | 1.191 | -2.394 | -0.543 |
08 | -2.234 | 0.546 | -0.958 | 0.578 |
09 | 1.347 | -2.694 | -2.584 | -4.4 |
10 | -0.368 | -3.903 | 1.119 | -1.489 |
11 | -2.163 | -1.242 | 1.203 | -1.328 |
12 | 1.199 | -1.681 | -1.067 | -1.868 |
13 | 1.179 | -1.489 | -1.189 | -1.525 |