Model info
| Transcription factor | Bhlhe40 | ||||||||
| Model | BHE40_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dCACGTGMv | ||||||||
| Best auROC (human) | 0.826 | ||||||||
| Best auROC (mouse) | 0.978 | ||||||||
| Peak sets in benchmark (human) | 10 | ||||||||
| Peak sets in benchmark (mouse) | 5 | ||||||||
| Aligned words | 505 | ||||||||
| TF family | Hairy-related factors {1.2.4} | ||||||||
| TF subfamily | Hairy-like factors {1.2.4.1} | ||||||||
| MGI | MGI:1097714 | ||||||||
| EntrezGene | GeneID:20893 (SSTAR profile) | ||||||||
| UniProt ID | BHE40_MOUSE | ||||||||
| UniProt AC | O35185 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Bhlhe40 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 145.0 | 19.0 | 253.0 | 83.0 |
| 02 | 62.0 | 435.0 | 1.0 | 2.0 |
| 03 | 469.0 | 5.0 | 8.0 | 18.0 |
| 04 | 2.0 | 447.0 | 10.0 | 41.0 |
| 05 | 14.0 | 6.0 | 476.0 | 4.0 |
| 06 | 9.0 | 8.0 | 11.0 | 472.0 |
| 07 | 0.0 | 0.0 | 499.0 | 1.0 |
| 08 | 328.0 | 139.0 | 31.0 | 2.0 |
| 09 | 63.0 | 253.0 | 137.0 | 47.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.147 | -1.818 | 0.699 | -0.403 |
| 02 | -0.689 | 1.238 | -3.903 | -3.573 |
| 03 | 1.313 | -2.961 | -2.584 | -1.868 |
| 04 | -3.573 | 1.265 | -2.394 | -1.09 |
| 05 | -2.096 | -2.819 | 1.328 | -3.126 |
| 06 | -2.484 | -2.584 | -2.311 | 1.32 |
| 07 | -4.4 | -4.4 | 1.375 | -3.903 |
| 08 | 0.957 | 0.105 | -1.358 | -3.573 |
| 09 | -0.673 | 0.699 | 0.091 | -0.958 |