We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorARNTL
(GeneCards)
ModelBMAL1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusbnbvnnnvdvCACGTGMb
Best auROC (human)0.881
Best auROC (mouse)0.868
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)15
Aligned words503
TF familyPAS domain factors {1.2.5}
TF subfamilyArnt-like factors {1.2.5.2}
HGNCHGNC:701
EntrezGeneGeneID:406
(SSTAR profile)
UniProt IDBMAL1_HUMAN
UniProt ACO00327
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.58436
0.0005 8.29591
0.0001 11.88186
GTEx tissue expression atlas ARNTL expression
ReMap ChIP-seq dataset list ARNTL datasets
Motifs in JASPAR
MA0603.1 (Arntl; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0114.010.09.026.065.057.055.027.025.048.018.051.013.012.046.019.0
0220.019.030.048.021.024.040.042.019.032.026.051.018.07.067.031.0
0332.014.028.04.015.030.025.012.027.057.064.015.08.041.0103.020.0
0414.035.020.013.027.064.017.034.043.076.034.067.02.021.015.013.0
0520.022.029.015.048.068.039.041.019.042.011.014.023.027.065.012.0
0619.025.050.016.043.042.031.043.027.039.053.025.08.035.029.010.0
0719.014.040.024.057.024.040.020.038.035.063.027.012.018.050.014.0
0829.021.058.018.031.012.030.018.051.028.086.028.011.09.041.024.0
0951.033.031.07.025.035.010.00.047.0114.038.016.023.031.030.04.0
1010.0134.02.00.09.0196.05.03.08.097.02.02.01.026.00.00.0
1120.00.07.01.0422.06.018.07.08.00.01.00.03.02.00.00.0
127.0365.04.077.03.02.00.03.03.019.00.04.00.07.00.01.0
130.00.013.00.06.06.0379.02.00.00.04.00.03.02.075.05.0
140.00.00.09.00.01.00.07.07.02.01.0461.00.00.00.07.0
150.00.06.01.00.00.03.00.00.00.01.00.08.01.0464.011.0
162.01.05.00.00.01.00.00.0328.065.039.042.07.00.02.03.0
1728.0149.0118.042.024.014.015.014.05.07.022.012.07.010.013.015.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.778-1.104-1.205-0.1720.7360.6050.57-0.134-0.210.435-0.5330.495-0.85-0.9280.393-0.48
02-0.429-0.48-0.030.435-0.382-0.250.2540.302-0.480.033-0.1720.495-0.533-1.4450.7660.002
030.033-0.778-0.098-1.966-0.711-0.03-0.21-0.928-0.1340.6050.72-0.711-1.3180.2791.194-0.429
04-0.7780.122-0.429-0.85-0.1340.72-0.5890.0930.3260.8910.0930.766-2.574-0.382-0.711-0.85
05-0.429-0.336-0.064-0.7110.4350.7810.2290.279-0.480.302-1.012-0.778-0.292-0.1340.736-0.928
06-0.48-0.210.475-0.6480.3260.3020.0020.326-0.1340.2290.533-0.21-1.3180.122-0.064-1.104
07-0.48-0.7780.254-0.250.605-0.250.254-0.4290.2030.1220.705-0.134-0.928-0.5330.475-0.778
08-0.064-0.3820.623-0.5330.002-0.928-0.03-0.5330.495-0.0981.014-0.098-1.012-1.2050.279-0.25
090.4950.0640.002-1.445-0.210.122-1.104-4.3920.4141.2950.203-0.648-0.2920.002-0.03-1.966
10-1.1041.456-2.574-4.392-1.2051.836-1.76-2.224-1.3181.134-2.574-2.574-3.117-0.172-4.392-4.392
11-0.429-4.392-1.445-3.1172.601-1.59-0.533-1.445-1.318-4.392-3.117-4.392-2.224-2.574-4.392-4.392
12-1.4452.457-1.9660.904-2.224-2.574-4.392-2.224-2.224-0.48-4.392-1.966-4.392-1.445-4.392-3.117
13-4.392-4.392-0.85-4.392-1.59-1.592.494-2.574-4.392-4.392-1.966-4.392-2.224-2.5740.878-1.76
14-4.392-4.392-4.392-1.205-4.392-3.117-4.392-1.445-1.445-2.574-3.1172.69-4.392-4.392-4.392-1.445
15-4.392-4.392-1.59-3.117-4.392-4.392-2.224-4.392-4.392-4.392-3.117-4.392-1.318-3.1172.696-1.012
16-2.574-3.117-1.76-4.392-4.392-3.117-4.392-4.3922.350.7360.2290.302-1.445-4.392-2.574-2.224
17-0.0981.5621.330.302-0.25-0.778-0.711-0.778-1.76-1.445-0.336-0.928-1.445-1.104-0.85-0.711