We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorARNTL
(GeneCards)
ModelBMAL1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusnSCAYGTGhbb
Best auROC (human)0.864
Best auROC (mouse)0.875
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)15
Aligned words410
TF familyPAS domain factors {1.2.5}
TF subfamilyArnt-like factors {1.2.5.2}
HGNCHGNC:701
EntrezGeneGeneID:406
(SSTAR profile)
UniProt IDBMAL1_HUMAN
UniProt ACO00327
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.960135
0.0005 4.810655
0.0001 6.480145
GTEx tissue expression atlas ARNTL expression
ReMap ChIP-seq dataset list ARNTL datasets
Motifs in JASPAR
PCM
ACGT
0166.066.0152.0126.0
0271.0214.0120.05.0
0327.0380.01.02.0
04368.05.014.023.0
0510.0300.014.086.0
063.09.0390.08.0
076.00.05.0399.0
080.02.0400.08.0
09186.0109.011.0104.0
1021.0202.0120.067.0
1157.0131.059.0163.0
PWM
ACGT
01-0.432-0.4320.3890.204
02-0.3610.7290.156-2.772
03-1.2941.3-3.727-3.391
041.268-2.772-1.903-1.446
05-2.2021.064-1.903-0.173
06-3.139-2.2931.326-2.393
07-2.629-4.236-2.7721.348
08-4.236-3.3911.351-2.393
090.5890.061-2.1180.014
10-1.5310.6710.156-0.418
11-0.5750.242-0.5420.459