Model info
| Transcription factor | Arntl | ||||||||
| Model | BMAL1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | MCACGTGMb | ||||||||
| Best auROC (human) | 0.866 | ||||||||
| Best auROC (mouse) | 0.88 | ||||||||
| Peak sets in benchmark (human) | 18 | ||||||||
| Peak sets in benchmark (mouse) | 15 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | PAS domain factors {1.2.5} | ||||||||
| TF subfamily | Arnt-like factors {1.2.5.2} | ||||||||
| MGI | MGI:1096381 | ||||||||
| EntrezGene | GeneID:11865 (SSTAR profile) | ||||||||
| UniProt ID | BMAL1_MOUSE | ||||||||
| UniProt AC | Q9WTL8 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Arntl expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 156.0 | 253.0 | 90.0 | 1.0 |
| 02 | 33.0 | 462.0 | 1.0 | 4.0 |
| 03 | 470.0 | 9.0 | 11.0 | 10.0 |
| 04 | 2.0 | 397.0 | 19.0 | 82.0 |
| 05 | 9.0 | 6.0 | 480.0 | 5.0 |
| 06 | 5.0 | 0.0 | 2.0 | 493.0 |
| 07 | 2.0 | 2.0 | 495.0 | 1.0 |
| 08 | 239.0 | 204.0 | 7.0 | 50.0 |
| 09 | 67.0 | 241.0 | 78.0 | 114.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.219 | 0.699 | -0.324 | -3.903 |
| 02 | -1.298 | 1.298 | -3.903 | -3.126 |
| 03 | 1.315 | -2.484 | -2.311 | -2.394 |
| 04 | -3.573 | 1.147 | -1.818 | -0.415 |
| 05 | -2.484 | -2.819 | 1.336 | -2.961 |
| 06 | -2.961 | -4.4 | -3.573 | 1.363 |
| 07 | -3.573 | -3.573 | 1.367 | -3.903 |
| 08 | 0.642 | 0.485 | -2.694 | -0.898 |
| 09 | -0.613 | 0.651 | -0.464 | -0.091 |