Model info
| Transcription factor | BPTF (GeneCards) | ||||||||
| Model | BPTF_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nKKnTTGTdKnv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 21 | ||||||||
| TF family | |||||||||
| TF subfamily | |||||||||
| HGNC | HGNC:3581 | ||||||||
| EntrezGene | GeneID:2186 (SSTAR profile) | ||||||||
| UniProt ID | BPTF_HUMAN | ||||||||
| UniProt AC | Q12830 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | BPTF expression | ||||||||
| ReMap ChIP-seq dataset list | BPTF datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.0 | 2.0 | 8.0 | 9.0 |
| 02 | 1.0 | 0.0 | 8.0 | 12.0 |
| 03 | 2.0 | 1.0 | 4.0 | 14.0 |
| 04 | 3.0 | 5.0 | 7.0 | 6.0 |
| 05 | 1.0 | 0.0 | 0.0 | 20.0 |
| 06 | 0.0 | 0.0 | 1.0 | 20.0 |
| 07 | 0.0 | 0.0 | 16.0 | 5.0 |
| 08 | 1.0 | 3.0 | 0.0 | 17.0 |
| 09 | 1.0 | 0.0 | 10.0 | 10.0 |
| 10 | 1.0 | 2.0 | 7.0 | 11.0 |
| 11 | 3.0 | 3.0 | 6.0 | 9.0 |
| 12 | 4.0 | 9.0 | 6.0 | 2.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.778 | -0.778 | 0.377 | 0.485 |
| 02 | -1.228 | -2.067 | 0.377 | 0.753 |
| 03 | -0.778 | -1.228 | -0.233 | 0.898 |
| 04 | -0.469 | -0.042 | 0.256 | 0.118 |
| 05 | -1.228 | -2.067 | -2.067 | 1.239 |
| 06 | -2.067 | -2.067 | -1.228 | 1.239 |
| 07 | -2.067 | -2.067 | 1.025 | -0.042 |
| 08 | -1.228 | -0.469 | -2.067 | 1.083 |
| 09 | -1.228 | -2.067 | 0.582 | 0.582 |
| 10 | -1.228 | -0.778 | 0.256 | 0.671 |
| 11 | -0.469 | -0.469 | 0.118 | 0.485 |
| 12 | -0.233 | 0.485 | 0.118 | -0.778 |