Check the newest release v12
Model info
Transcription factorT
(GeneCards)
ModelBRAC_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length27
Quality
A
Motif rank
0
ConsensusndddnndddYvdMRbnnddRTGhbARn
Best auROC (human)0.854
Best auROC (mouse)0.843
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)10
Aligned words502
TF familyBrachyury-related factors {6.5.1}
TF subfamilyT (Brachyury) {6.5.1.0.1}
HGNCHGNC:11515
EntrezGeneGeneID:6862
(SSTAR profile)
UniProt IDBRAC_HUMAN
UniProt ACO15178
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.03556
0.0005 11.701710000000002
0.0001 15.23446
GTEx tissue expression atlas T expression
ReMap ChIP-seq dataset list T datasets
Motifs in JASPAR
MA0009.1 (T; Mus musculus)
MA0009.2 (T; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0129.020.061.010.043.019.08.028.035.034.081.031.021.07.056.017.0
0253.013.043.019.036.09.08.027.055.023.064.064.014.09.050.013.0
0355.014.068.021.015.07.09.023.040.023.052.050.012.07.074.030.0
0428.012.054.028.014.08.011.018.049.037.068.049.013.024.058.029.0
0527.023.026.028.010.031.03.037.064.031.037.059.023.038.038.025.0
0683.011.019.011.077.017.010.019.065.07.026.06.057.025.025.042.0
07112.038.066.066.038.04.09.09.029.013.023.015.018.020.017.023.0
0832.013.033.0119.020.03.04.048.017.017.036.045.010.09.025.069.0
0913.010.06.050.05.06.02.029.06.013.07.072.07.014.013.0247.0
1019.07.04.01.018.020.01.04.014.06.07.01.0150.0127.085.036.0
1168.01.0109.023.090.012.020.038.035.03.052.07.017.02.022.01.0
1210.0183.09.08.01.017.00.00.046.0136.017.04.07.057.02.03.0
1325.05.027.07.0339.07.031.016.017.03.07.01.04.01.09.01.0
1443.0142.0147.053.010.01.00.05.09.026.029.010.05.07.08.05.0
1510.08.041.08.069.046.012.049.033.037.086.028.011.017.030.015.0
1622.017.056.028.037.030.018.023.029.028.076.036.025.013.034.028.0
1730.014.044.025.038.08.07.035.0108.020.045.011.048.013.024.030.0
1853.019.0125.027.024.02.04.025.022.013.077.08.029.03.050.019.0
1918.016.080.014.013.09.08.07.032.031.0175.018.09.08.055.07.0
207.02.02.061.00.04.01.059.018.018.012.0270.01.06.03.036.0
214.04.018.00.02.02.024.02.02.00.015.01.09.011.0396.010.0
227.01.01.08.01.04.00.012.0145.056.031.0221.08.01.03.01.0
2311.029.092.029.011.018.010.023.00.014.016.05.018.044.0136.044.0
2438.00.01.01.090.07.04.04.0219.07.026.02.076.03.019.03.0
25247.027.0118.031.08.05.03.01.021.03.026.00.06.01.01.02.0
2688.053.070.071.017.09.01.09.052.032.042.022.06.06.014.08.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.074-0.4390.663-1.1140.316-0.49-1.328-0.1080.1120.0830.945-0.008-0.392-1.4540.578-0.599
020.523-0.860.316-0.490.14-1.215-1.328-0.1440.56-0.3020.7110.711-0.788-1.2150.465-0.86
030.56-0.7880.771-0.392-0.721-1.454-1.215-0.3020.244-0.3020.5040.465-0.938-1.4540.855-0.04
04-0.108-0.9380.542-0.108-0.788-1.328-1.022-0.5430.4450.1670.7710.445-0.86-0.260.613-0.074
05-0.144-0.302-0.181-0.108-1.114-0.008-2.2340.1670.711-0.0080.1670.63-0.3020.1930.193-0.22
060.969-1.022-0.49-1.0220.894-0.599-1.114-0.490.726-1.454-0.181-1.60.595-0.22-0.220.293
071.2680.1930.7410.7410.193-1.975-1.215-1.215-0.074-0.86-0.302-0.721-0.543-0.439-0.599-0.302
080.023-0.860.0541.328-0.439-2.234-1.9750.425-0.599-0.5990.140.361-1.114-1.215-0.220.785
09-0.86-1.114-1.60.465-1.77-1.6-2.584-0.074-1.6-0.86-1.4540.828-1.454-0.788-0.862.057
10-0.49-1.454-1.975-3.126-0.543-0.439-3.126-1.975-0.788-1.6-1.454-3.1261.5591.3930.9930.14
110.771-3.1261.241-0.3021.05-0.938-0.4390.1930.112-2.2340.504-1.454-0.599-2.584-0.346-3.126
12-1.1141.757-1.215-1.328-3.126-0.599-4.4-4.40.3831.461-0.599-1.975-1.4540.595-2.584-2.234
13-0.22-1.77-0.144-1.4542.373-1.454-0.008-0.658-0.599-2.234-1.454-3.126-1.975-3.126-1.215-3.126
140.3161.5041.5390.523-1.114-3.126-4.4-1.77-1.215-0.181-0.074-1.114-1.77-1.454-1.328-1.77
15-1.114-1.3280.269-1.3280.7850.383-0.9380.4450.0540.1671.004-0.108-1.022-0.599-0.04-0.721
16-0.346-0.5990.578-0.1080.167-0.04-0.543-0.302-0.074-0.1080.8810.14-0.22-0.860.083-0.108
17-0.04-0.7880.339-0.220.193-1.328-1.4540.1121.231-0.4390.361-1.0220.425-0.86-0.26-0.04
180.523-0.491.377-0.144-0.26-2.584-1.975-0.22-0.346-0.860.894-1.328-0.074-2.2340.465-0.49
19-0.543-0.6580.932-0.788-0.86-1.215-1.328-1.4540.023-0.0081.713-0.543-1.215-1.3280.56-1.454
20-1.454-2.584-2.5840.663-4.4-1.975-3.1260.63-0.543-0.543-0.9382.145-3.126-1.6-2.2340.14
21-1.975-1.975-0.543-4.4-2.584-2.584-0.26-2.584-2.584-4.4-0.721-3.126-1.215-1.0222.528-1.114
22-1.454-3.126-3.126-1.328-3.126-1.975-4.4-0.9381.5250.578-0.0081.946-1.328-3.126-2.234-3.126
23-1.022-0.0741.072-0.074-1.022-0.543-1.114-0.302-4.4-0.788-0.658-1.77-0.5430.3391.4610.339
240.193-4.4-3.126-3.1261.05-1.454-1.975-1.9751.936-1.454-0.181-2.5840.881-2.234-0.49-2.234
252.057-0.1441.32-0.008-1.328-1.77-2.234-3.126-0.392-2.234-0.181-4.4-1.6-3.126-3.126-2.584
261.0270.5230.80.814-0.599-1.215-3.126-1.2150.5040.0230.293-0.346-1.6-1.6-0.788-1.328