We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorT
(GeneCards)
ModelBRAC_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length27
Quality
A
Motif rank
0
ConsensusndddnndddYvdMRbnnddRTGhbARn
Best auROC (human)0.854
Best auROC (mouse)0.843
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)10
Aligned words502
TF familyBrachyury-related factors {6.5.1}
TF subfamilyT (Brachyury) {6.5.1.0.1}
HGNCHGNC:11515
EntrezGeneGeneID:6862
(SSTAR profile)
UniProt IDBRAC_HUMAN
UniProt ACO15178
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.03556
0.0005 11.701710000000002
0.0001 15.23446
GTEx tissue expression atlas T expression
ReMap ChIP-seq dataset list T datasets
Motifs in JASPAR
MA0009.1 (T; Mus musculus)
MA0009.2 (T; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0129.020.061.010.043.019.08.028.035.034.081.031.021.07.056.017.0
0253.013.043.019.036.09.08.027.055.023.064.064.014.09.050.013.0
0355.014.068.021.015.07.09.023.040.023.052.050.012.07.074.030.0
0428.012.054.028.014.08.011.018.049.037.068.049.013.024.058.029.0
0527.023.026.028.010.031.03.037.064.031.037.059.023.038.038.025.0
0683.011.019.011.077.017.010.019.065.07.026.06.057.025.025.042.0
07112.038.066.066.038.04.09.09.029.013.023.015.018.020.017.023.0
0832.013.033.0119.020.03.04.048.017.017.036.045.010.09.025.069.0
0913.010.06.050.05.06.02.029.06.013.07.072.07.014.013.0247.0
1019.07.04.01.018.020.01.04.014.06.07.01.0150.0127.085.036.0
1168.01.0109.023.090.012.020.038.035.03.052.07.017.02.022.01.0
1210.0183.09.08.01.017.00.00.046.0136.017.04.07.057.02.03.0
1325.05.027.07.0339.07.031.016.017.03.07.01.04.01.09.01.0
1443.0142.0147.053.010.01.00.05.09.026.029.010.05.07.08.05.0
1510.08.041.08.069.046.012.049.033.037.086.028.011.017.030.015.0
1622.017.056.028.037.030.018.023.029.028.076.036.025.013.034.028.0
1730.014.044.025.038.08.07.035.0108.020.045.011.048.013.024.030.0
1853.019.0125.027.024.02.04.025.022.013.077.08.029.03.050.019.0
1918.016.080.014.013.09.08.07.032.031.0175.018.09.08.055.07.0
207.02.02.061.00.04.01.059.018.018.012.0270.01.06.03.036.0
214.04.018.00.02.02.024.02.02.00.015.01.09.011.0396.010.0
227.01.01.08.01.04.00.012.0145.056.031.0221.08.01.03.01.0
2311.029.092.029.011.018.010.023.00.014.016.05.018.044.0136.044.0
2438.00.01.01.090.07.04.04.0219.07.026.02.076.03.019.03.0
25247.027.0118.031.08.05.03.01.021.03.026.00.06.01.01.02.0
2688.053.070.071.017.09.01.09.052.032.042.022.06.06.014.08.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.074-0.4390.663-1.1140.316-0.49-1.328-0.1080.1120.0830.945-0.008-0.392-1.4540.578-0.599
020.523-0.860.316-0.490.14-1.215-1.328-0.1440.56-0.3020.7110.711-0.788-1.2150.465-0.86
030.56-0.7880.771-0.392-0.721-1.454-1.215-0.3020.244-0.3020.5040.465-0.938-1.4540.855-0.04
04-0.108-0.9380.542-0.108-0.788-1.328-1.022-0.5430.4450.1670.7710.445-0.86-0.260.613-0.074
05-0.144-0.302-0.181-0.108-1.114-0.008-2.2340.1670.711-0.0080.1670.63-0.3020.1930.193-0.22
060.969-1.022-0.49-1.0220.894-0.599-1.114-0.490.726-1.454-0.181-1.60.595-0.22-0.220.293
071.2680.1930.7410.7410.193-1.975-1.215-1.215-0.074-0.86-0.302-0.721-0.543-0.439-0.599-0.302
080.023-0.860.0541.328-0.439-2.234-1.9750.425-0.599-0.5990.140.361-1.114-1.215-0.220.785
09-0.86-1.114-1.60.465-1.77-1.6-2.584-0.074-1.6-0.86-1.4540.828-1.454-0.788-0.862.057
10-0.49-1.454-1.975-3.126-0.543-0.439-3.126-1.975-0.788-1.6-1.454-3.1261.5591.3930.9930.14
110.771-3.1261.241-0.3021.05-0.938-0.4390.1930.112-2.2340.504-1.454-0.599-2.584-0.346-3.126
12-1.1141.757-1.215-1.328-3.126-0.599-4.4-4.40.3831.461-0.599-1.975-1.4540.595-2.584-2.234
13-0.22-1.77-0.144-1.4542.373-1.454-0.008-0.658-0.599-2.234-1.454-3.126-1.975-3.126-1.215-3.126
140.3161.5041.5390.523-1.114-3.126-4.4-1.77-1.215-0.181-0.074-1.114-1.77-1.454-1.328-1.77
15-1.114-1.3280.269-1.3280.7850.383-0.9380.4450.0540.1671.004-0.108-1.022-0.599-0.04-0.721
16-0.346-0.5990.578-0.1080.167-0.04-0.543-0.302-0.074-0.1080.8810.14-0.22-0.860.083-0.108
17-0.04-0.7880.339-0.220.193-1.328-1.4540.1121.231-0.4390.361-1.0220.425-0.86-0.26-0.04
180.523-0.491.377-0.144-0.26-2.584-1.975-0.22-0.346-0.860.894-1.328-0.074-2.2340.465-0.49
19-0.543-0.6580.932-0.788-0.86-1.215-1.328-1.4540.023-0.0081.713-0.543-1.215-1.3280.56-1.454
20-1.454-2.584-2.5840.663-4.4-1.975-3.1260.63-0.543-0.543-0.9382.145-3.126-1.6-2.2340.14
21-1.975-1.975-0.543-4.4-2.584-2.584-0.26-2.584-2.584-4.4-0.721-3.126-1.215-1.0222.528-1.114
22-1.454-3.126-3.126-1.328-3.126-1.975-4.4-0.9381.5250.578-0.0081.946-1.328-3.126-2.234-3.126
23-1.022-0.0741.072-0.074-1.022-0.543-1.114-0.302-4.4-0.788-0.658-1.77-0.5430.3391.4610.339
240.193-4.4-3.126-3.1261.05-1.454-1.975-1.9751.936-1.454-0.181-2.5840.881-2.234-0.49-2.234
252.057-0.1441.32-0.008-1.328-1.77-2.234-3.126-0.392-2.234-0.181-4.4-1.6-3.126-3.126-2.584
261.0270.5230.80.814-0.599-1.215-3.126-1.2150.5040.0230.293-0.346-1.6-1.6-0.788-1.328