Model info
| Transcription factor | T (GeneCards) | ||||||||
| Model | BRAC_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bYvvMRdvnvdSTGWKARdd | ||||||||
| Best auROC (human) | 0.835 | ||||||||
| Best auROC (mouse) | 0.818 | ||||||||
| Peak sets in benchmark (human) | 9 | ||||||||
| Peak sets in benchmark (mouse) | 10 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Brachyury-related factors {6.5.1} | ||||||||
| TF subfamily | T (Brachyury) {6.5.1.0.1} | ||||||||
| HGNC | HGNC:11515 | ||||||||
| EntrezGene | GeneID:6862 (SSTAR profile) | ||||||||
| UniProt ID | BRAC_HUMAN | ||||||||
| UniProt AC | O15178 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | T expression | ||||||||
| ReMap ChIP-seq dataset list | T datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 60.0 | 126.0 | 73.0 | 241.0 |
| 02 | 39.0 | 101.0 | 53.0 | 307.0 |
| 03 | 168.0 | 156.0 | 112.0 | 64.0 |
| 04 | 167.0 | 82.0 | 190.0 | 61.0 |
| 05 | 69.0 | 337.0 | 64.0 | 30.0 |
| 06 | 335.0 | 36.0 | 81.0 | 48.0 |
| 07 | 99.0 | 87.0 | 204.0 | 110.0 |
| 08 | 91.0 | 126.0 | 201.0 | 82.0 |
| 09 | 122.0 | 83.0 | 170.0 | 125.0 |
| 10 | 235.0 | 95.0 | 115.0 | 55.0 |
| 11 | 172.0 | 26.0 | 219.0 | 83.0 |
| 12 | 30.0 | 64.0 | 374.0 | 32.0 |
| 13 | 19.0 | 8.0 | 2.0 | 471.0 |
| 14 | 1.0 | 7.0 | 485.0 | 7.0 |
| 15 | 112.0 | 26.0 | 22.0 | 340.0 |
| 16 | 16.0 | 76.0 | 316.0 | 92.0 |
| 17 | 453.0 | 10.0 | 31.0 | 6.0 |
| 18 | 330.0 | 29.0 | 111.0 | 30.0 |
| 19 | 175.0 | 44.0 | 131.0 | 150.0 |
| 20 | 100.0 | 68.0 | 99.0 | 233.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.721 | 0.008 | -0.529 | 0.651 |
| 02 | -1.138 | -0.21 | -0.841 | 0.891 |
| 03 | 0.293 | 0.219 | -0.108 | -0.658 |
| 04 | 0.287 | -0.415 | 0.415 | -0.705 |
| 05 | -0.584 | 0.984 | -0.658 | -1.389 |
| 06 | 0.978 | -1.215 | -0.427 | -0.938 |
| 07 | -0.23 | -0.357 | 0.485 | -0.126 |
| 08 | -0.313 | 0.008 | 0.47 | -0.415 |
| 09 | -0.024 | -0.403 | 0.304 | 0.0 |
| 10 | 0.626 | -0.271 | -0.082 | -0.805 |
| 11 | 0.316 | -1.525 | 0.555 | -0.403 |
| 12 | -1.389 | -0.658 | 1.088 | -1.328 |
| 13 | -1.818 | -2.584 | -3.573 | 1.317 |
| 14 | -3.903 | -2.694 | 1.347 | -2.694 |
| 15 | -0.108 | -1.525 | -1.681 | 0.993 |
| 16 | -1.975 | -0.49 | 0.92 | -0.302 |
| 17 | 1.279 | -2.394 | -1.358 | -2.819 |
| 18 | 0.963 | -1.421 | -0.117 | -1.389 |
| 19 | 0.333 | -1.022 | 0.046 | 0.18 |
| 20 | -0.22 | -0.599 | -0.23 | 0.617 |