We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorT
(GeneCards)
ModelBRAC_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusbYvvMRdvnvdSTGWKARdd
Best auROC (human)0.835
Best auROC (mouse)0.818
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)10
Aligned words500
TF familyBrachyury-related factors {6.5.1}
TF subfamilyT (Brachyury) {6.5.1.0.1}
HGNCHGNC:11515
EntrezGeneGeneID:6862
(SSTAR profile)
UniProt IDBRAC_HUMAN
UniProt ACO15178
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.10091
0.0005 5.93521
0.0001 7.654960000000001
GTEx tissue expression atlas T expression
ReMap ChIP-seq dataset list T datasets
Motifs in JASPAR
MA0009.1 (T; Mus musculus)
MA0009.2 (T; Homo sapiens)
PCM
ACGT
0160.0126.073.0241.0
0239.0101.053.0307.0
03168.0156.0112.064.0
04167.082.0190.061.0
0569.0337.064.030.0
06335.036.081.048.0
0799.087.0204.0110.0
0891.0126.0201.082.0
09122.083.0170.0125.0
10235.095.0115.055.0
11172.026.0219.083.0
1230.064.0374.032.0
1319.08.02.0471.0
141.07.0485.07.0
15112.026.022.0340.0
1616.076.0316.092.0
17453.010.031.06.0
18330.029.0111.030.0
19175.044.0131.0150.0
20100.068.099.0233.0
PWM
ACGT
01-0.7210.008-0.5290.651
02-1.138-0.21-0.8410.891
030.2930.219-0.108-0.658
040.287-0.4150.415-0.705
05-0.5840.984-0.658-1.389
060.978-1.215-0.427-0.938
07-0.23-0.3570.485-0.126
08-0.3130.0080.47-0.415
09-0.024-0.4030.3040.0
100.626-0.271-0.082-0.805
110.316-1.5250.555-0.403
12-1.389-0.6581.088-1.328
13-1.818-2.584-3.5731.317
14-3.903-2.6941.347-2.694
15-0.108-1.525-1.6810.993
16-1.975-0.490.92-0.302
171.279-2.394-1.358-2.819
180.963-1.421-0.117-1.389
190.333-1.0220.0460.18
20-0.22-0.599-0.230.617