Model info
| Transcription factor | T (GeneCards) | ||||||||
| Model | BRAC_HUMAN.H11MO.1.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dRSTGWSARdd | ||||||||
| Best auROC (human) | 0.8 | ||||||||
| Best auROC (mouse) | 0.757 | ||||||||
| Peak sets in benchmark (human) | 9 | ||||||||
| Peak sets in benchmark (mouse) | 10 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Brachyury-related factors {6.5.1} | ||||||||
| TF subfamily | T (Brachyury) {6.5.1.0.1} | ||||||||
| HGNC | HGNC:11515 | ||||||||
| EntrezGene | GeneID:6862 (SSTAR profile) | ||||||||
| UniProt ID | BRAC_HUMAN | ||||||||
| UniProt AC | O15178 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | T expression | ||||||||
| ReMap ChIP-seq dataset list | T datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 234.0 | 44.0 | 105.0 | 117.0 |
| 02 | 124.0 | 19.0 | 291.0 | 66.0 |
| 03 | 17.0 | 127.0 | 350.0 | 6.0 |
| 04 | 7.0 | 5.0 | 2.0 | 486.0 |
| 05 | 3.0 | 0.0 | 490.0 | 7.0 |
| 06 | 104.0 | 3.0 | 55.0 | 338.0 |
| 07 | 12.0 | 55.0 | 381.0 | 52.0 |
| 08 | 471.0 | 5.0 | 22.0 | 2.0 |
| 09 | 348.0 | 5.0 | 129.0 | 18.0 |
| 10 | 255.0 | 54.0 | 118.0 | 73.0 |
| 11 | 148.0 | 57.0 | 124.0 | 171.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.621 | -1.022 | -0.172 | -0.065 |
| 02 | -0.008 | -1.818 | 0.838 | -0.628 |
| 03 | -1.92 | 0.016 | 1.022 | -2.819 |
| 04 | -2.694 | -2.961 | -3.573 | 1.349 |
| 05 | -3.325 | -4.4 | 1.357 | -2.694 |
| 06 | -0.181 | -3.325 | -0.805 | 0.987 |
| 07 | -2.234 | -0.805 | 1.106 | -0.86 |
| 08 | 1.317 | -2.961 | -1.681 | -3.573 |
| 09 | 1.016 | -2.961 | 0.031 | -1.868 |
| 10 | 0.707 | -0.823 | -0.057 | -0.529 |
| 11 | 0.167 | -0.771 | -0.008 | 0.31 |