We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorT
(GeneCards)
ModelBRAC_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
1
ConsensusdRSTGWSARdd
Best auROC (human)0.8
Best auROC (mouse)0.757
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)10
Aligned words500
TF familyBrachyury-related factors {6.5.1}
TF subfamilyT (Brachyury) {6.5.1.0.1}
HGNCHGNC:11515
EntrezGeneGeneID:6862
(SSTAR profile)
UniProt IDBRAC_HUMAN
UniProt ACO15178
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.503475
0.0005 6.331799999999999
0.0001 7.87251
GTEx tissue expression atlas T expression
ReMap ChIP-seq dataset list T datasets
Motifs in JASPAR
PCM
ACGT
01234.044.0105.0117.0
02124.019.0291.066.0
0317.0127.0350.06.0
047.05.02.0486.0
053.00.0490.07.0
06104.03.055.0338.0
0712.055.0381.052.0
08471.05.022.02.0
09348.05.0129.018.0
10255.054.0118.073.0
11148.057.0124.0171.0
PWM
ACGT
010.621-1.022-0.172-0.065
02-0.008-1.8180.838-0.628
03-1.920.0161.022-2.819
04-2.694-2.961-3.5731.349
05-3.325-4.41.357-2.694
06-0.181-3.325-0.8050.987
07-2.234-0.8051.106-0.86
081.317-2.961-1.681-3.573
091.016-2.9610.031-1.868
100.707-0.823-0.057-0.529
110.167-0.771-0.0080.31