Transcription factor | T (GeneCards) | ||||||||
Model | BRAC_HUMAN.H11MO.1.B | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 11 | ||||||||
Quality | B | ||||||||
Motif rank | 1 | ||||||||
Consensus | dRSTGWSARdd | ||||||||
Best auROC (human) | 0.8 | ||||||||
Best auROC (mouse) | 0.757 | ||||||||
Peak sets in benchmark (human) | 9 | ||||||||
Peak sets in benchmark (mouse) | 10 | ||||||||
Aligned words | 500 | ||||||||
TF family | Brachyury-related factors {6.5.1} | ||||||||
TF subfamily | T (Brachyury) {6.5.1.0.1} | ||||||||
HGNC | HGNC:11515 | ||||||||
EntrezGene | GeneID:6862 (SSTAR profile) | ||||||||
UniProt ID | BRAC_HUMAN | ||||||||
UniProt AC | O15178 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | T expression | ||||||||
ReMap ChIP-seq dataset list | T datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 234.0 | 44.0 | 105.0 | 117.0 |
02 | 124.0 | 19.0 | 291.0 | 66.0 |
03 | 17.0 | 127.0 | 350.0 | 6.0 |
04 | 7.0 | 5.0 | 2.0 | 486.0 |
05 | 3.0 | 0.0 | 490.0 | 7.0 |
06 | 104.0 | 3.0 | 55.0 | 338.0 |
07 | 12.0 | 55.0 | 381.0 | 52.0 |
08 | 471.0 | 5.0 | 22.0 | 2.0 |
09 | 348.0 | 5.0 | 129.0 | 18.0 |
10 | 255.0 | 54.0 | 118.0 | 73.0 |
11 | 148.0 | 57.0 | 124.0 | 171.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.621 | -1.022 | -0.172 | -0.065 |
02 | -0.008 | -1.818 | 0.838 | -0.628 |
03 | -1.92 | 0.016 | 1.022 | -2.819 |
04 | -2.694 | -2.961 | -3.573 | 1.349 |
05 | -3.325 | -4.4 | 1.357 | -2.694 |
06 | -0.181 | -3.325 | -0.805 | 0.987 |
07 | -2.234 | -0.805 | 1.106 | -0.86 |
08 | 1.317 | -2.961 | -1.681 | -3.573 |
09 | 1.016 | -2.961 | 0.031 | -1.868 |
10 | 0.707 | -0.823 | -0.057 | -0.529 |
11 | 0.167 | -0.771 | -0.008 | 0.31 |