We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorT
ModelBRAC_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length27
Quality
A
Motif rank
0
ConsensusnWTvdYWbbddnSTGWKARdbnnnndn
Best auROC (human)0.807
Best auROC (mouse)0.81
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)10
Aligned words284
TF familyBrachyury-related factors {6.5.1}
TF subfamilyT (Brachyury) {6.5.1.0.1}
MGIMGI:98472
EntrezGeneGeneID:20997
(SSTAR profile)
UniProt IDBRAC_MOUSE
UniProt ACP20293
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.649160000000002
0.0005 10.62786
0.0001 14.80846
GTEx tissue expression atlas T expression
Motifs in JASPAR
MA0009.1 (T; Mus musculus)
MA0009.2 (T; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
014.01.015.058.05.05.03.035.011.08.014.044.019.04.05.053.0
024.00.02.033.03.03.00.012.00.06.02.029.00.05.01.0184.0
032.00.04.01.06.06.00.02.01.03.00.01.0126.037.063.032.0
0453.04.075.03.023.06.06.011.018.01.021.027.03.02.027.04.0
053.085.03.06.02.010.01.00.08.098.06.017.05.030.08.02.0
066.00.09.03.0186.05.06.026.010.02.04.02.03.01.09.012.0
0725.098.051.031.03.02.00.03.06.09.012.01.09.08.015.011.0
086.014.021.02.015.028.04.070.012.023.024.019.02.025.08.011.0
0911.06.011.07.047.011.013.019.013.06.017.021.051.010.028.013.0
1054.08.049.011.013.05.03.012.022.012.016.019.019.05.027.09.0
1139.025.037.07.010.05.01.014.028.018.032.017.06.010.015.020.0
122.013.066.02.08.033.08.09.00.08.071.06.01.012.045.00.0
130.00.00.011.00.01.00.065.04.07.02.0177.01.02.01.013.0
140.01.03.01.00.00.010.00.00.00.03.00.00.010.0255.01.0
150.00.00.00.00.00.00.011.034.021.012.0204.01.00.00.01.0
160.08.024.03.03.03.06.09.00.02.09.01.06.016.0161.033.0
178.00.01.00.027.01.01.00.0189.04.06.01.041.00.01.04.0
18178.015.047.025.02.01.01.01.06.02.00.01.02.00.03.00.0
1982.013.025.068.05.04.00.09.014.09.014.014.06.07.07.07.0
2010.018.021.058.04.01.01.027.08.05.08.025.05.015.020.058.0
213.012.09.03.012.012.03.012.021.012.08.09.019.057.042.050.0
223.020.015.017.025.044.02.022.010.016.015.021.05.024.033.012.0
239.011.015.08.013.026.010.055.012.010.027.016.010.017.021.024.0
249.013.014.08.027.011.05.021.012.028.013.020.03.013.036.051.0
2511.015.022.03.025.08.016.016.015.010.026.017.029.05.049.017.0
2624.030.021.05.014.010.02.012.036.031.033.013.06.07.021.019.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.425-2.594-0.1651.17-1.218-1.218-1.6860.669-0.467-0.773-0.2320.8960.067-1.425-1.2181.081
02-1.425-3.937-2.040.611-1.686-1.686-3.937-0.382-3.937-1.047-2.040.483-3.937-1.218-2.5942.321
03-2.04-3.937-1.425-2.594-1.047-1.047-3.937-2.04-2.594-1.686-3.937-2.5941.9430.7241.2530.581
041.081-1.4251.426-1.6860.255-1.047-1.047-0.4670.014-2.5940.1650.413-1.686-2.040.413-1.425
05-1.6861.551-1.686-1.047-2.04-0.559-2.594-3.937-0.7731.692-1.047-0.042-1.2180.517-0.773-2.04
06-1.047-3.937-0.66-1.6862.332-1.218-1.0470.376-0.559-2.04-1.425-2.04-1.686-2.594-0.66-0.382
070.3371.6921.0430.549-1.686-2.04-3.937-1.686-1.047-0.66-0.382-2.594-0.66-0.773-0.165-0.467
08-1.047-0.2320.165-2.04-0.1650.449-1.4251.357-0.3820.2550.2970.067-2.040.337-0.773-0.467
09-0.467-1.047-0.467-0.9010.962-0.467-0.3040.067-0.304-1.047-0.0420.1651.043-0.5590.449-0.304
101.099-0.7731.003-0.467-0.304-1.218-1.686-0.3820.211-0.382-0.1020.0670.067-1.2180.413-0.66
110.7760.3370.724-0.901-0.559-1.218-2.594-0.2320.4490.0140.581-0.042-1.047-0.559-0.1650.117
12-2.04-0.3041.299-2.04-0.7730.611-0.773-0.66-3.937-0.7731.372-1.047-2.594-0.3820.918-3.937
13-3.937-3.937-3.937-0.467-3.937-2.594-3.9371.284-1.425-0.901-2.042.282-2.594-2.04-2.594-0.304
14-3.937-2.594-1.686-2.594-3.937-3.937-0.559-3.937-3.937-3.937-1.686-3.937-3.937-0.5592.647-2.594
15-3.937-3.937-3.937-3.937-3.937-3.937-3.937-0.4670.6410.165-0.3822.424-2.594-3.937-3.937-2.594
16-3.937-0.7730.297-1.686-1.686-1.686-1.047-0.66-3.937-2.04-0.66-2.594-1.047-0.1022.1880.611
17-0.773-3.937-2.594-3.9370.413-2.594-2.594-3.9372.348-1.425-1.047-2.5940.826-3.937-2.594-1.425
182.288-0.1650.9620.337-2.04-2.594-2.594-2.594-1.047-2.04-3.937-2.594-2.04-3.937-1.686-3.937
191.515-0.3040.3371.329-1.218-1.425-3.937-0.66-0.232-0.66-0.232-0.232-1.047-0.901-0.901-0.901
20-0.5590.0140.1651.17-1.425-2.594-2.5940.413-0.773-1.218-0.7730.337-1.218-0.1650.1171.17
21-1.686-0.382-0.66-1.686-0.382-0.382-1.686-0.3820.165-0.382-0.773-0.660.0671.1530.851.023
22-1.6860.117-0.165-0.0420.3370.896-2.040.211-0.559-0.102-0.1650.165-1.2180.2970.611-0.382
23-0.66-0.467-0.165-0.773-0.3040.376-0.5591.118-0.382-0.5590.413-0.102-0.559-0.0420.1650.297
24-0.66-0.304-0.232-0.7730.413-0.467-1.2180.165-0.3820.449-0.3040.117-1.686-0.3040.6971.043
25-0.467-0.1650.211-1.6860.337-0.773-0.102-0.102-0.165-0.5590.376-0.0420.483-1.2181.003-0.042
260.2970.5170.165-1.218-0.232-0.559-2.04-0.3820.6970.5490.611-0.304-1.047-0.9010.1650.067