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Model info
Transcription factorT
ModelBRAC_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length27
Quality
A
Motif rank
0
ConsensusnWTvdYWbbddnSTGWKARdbnnnndn
Best auROC (human)0.807
Best auROC (mouse)0.81
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)10
Aligned words284
TF familyBrachyury-related factors {6.5.1}
TF subfamilyT (Brachyury) {6.5.1.0.1}
MGIMGI:98472
EntrezGeneGeneID:20997
(SSTAR profile)
UniProt IDBRAC_MOUSE
UniProt ACP20293
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.649160000000002
0.0005 10.62786
0.0001 14.80846
GTEx tissue expression atlas T expression
Motifs in JASPAR
MA0009.1 (T; Mus musculus)
MA0009.2 (T; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
014.01.015.058.05.05.03.035.011.08.014.044.019.04.05.053.0
024.00.02.033.03.03.00.012.00.06.02.029.00.05.01.0184.0
032.00.04.01.06.06.00.02.01.03.00.01.0126.037.063.032.0
0453.04.075.03.023.06.06.011.018.01.021.027.03.02.027.04.0
053.085.03.06.02.010.01.00.08.098.06.017.05.030.08.02.0
066.00.09.03.0186.05.06.026.010.02.04.02.03.01.09.012.0
0725.098.051.031.03.02.00.03.06.09.012.01.09.08.015.011.0
086.014.021.02.015.028.04.070.012.023.024.019.02.025.08.011.0
0911.06.011.07.047.011.013.019.013.06.017.021.051.010.028.013.0
1054.08.049.011.013.05.03.012.022.012.016.019.019.05.027.09.0
1139.025.037.07.010.05.01.014.028.018.032.017.06.010.015.020.0
122.013.066.02.08.033.08.09.00.08.071.06.01.012.045.00.0
130.00.00.011.00.01.00.065.04.07.02.0177.01.02.01.013.0
140.01.03.01.00.00.010.00.00.00.03.00.00.010.0255.01.0
150.00.00.00.00.00.00.011.034.021.012.0204.01.00.00.01.0
160.08.024.03.03.03.06.09.00.02.09.01.06.016.0161.033.0
178.00.01.00.027.01.01.00.0189.04.06.01.041.00.01.04.0
18178.015.047.025.02.01.01.01.06.02.00.01.02.00.03.00.0
1982.013.025.068.05.04.00.09.014.09.014.014.06.07.07.07.0
2010.018.021.058.04.01.01.027.08.05.08.025.05.015.020.058.0
213.012.09.03.012.012.03.012.021.012.08.09.019.057.042.050.0
223.020.015.017.025.044.02.022.010.016.015.021.05.024.033.012.0
239.011.015.08.013.026.010.055.012.010.027.016.010.017.021.024.0
249.013.014.08.027.011.05.021.012.028.013.020.03.013.036.051.0
2511.015.022.03.025.08.016.016.015.010.026.017.029.05.049.017.0
2624.030.021.05.014.010.02.012.036.031.033.013.06.07.021.019.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.425-2.594-0.1651.17-1.218-1.218-1.6860.669-0.467-0.773-0.2320.8960.067-1.425-1.2181.081
02-1.425-3.937-2.040.611-1.686-1.686-3.937-0.382-3.937-1.047-2.040.483-3.937-1.218-2.5942.321
03-2.04-3.937-1.425-2.594-1.047-1.047-3.937-2.04-2.594-1.686-3.937-2.5941.9430.7241.2530.581
041.081-1.4251.426-1.6860.255-1.047-1.047-0.4670.014-2.5940.1650.413-1.686-2.040.413-1.425
05-1.6861.551-1.686-1.047-2.04-0.559-2.594-3.937-0.7731.692-1.047-0.042-1.2180.517-0.773-2.04
06-1.047-3.937-0.66-1.6862.332-1.218-1.0470.376-0.559-2.04-1.425-2.04-1.686-2.594-0.66-0.382
070.3371.6921.0430.549-1.686-2.04-3.937-1.686-1.047-0.66-0.382-2.594-0.66-0.773-0.165-0.467
08-1.047-0.2320.165-2.04-0.1650.449-1.4251.357-0.3820.2550.2970.067-2.040.337-0.773-0.467
09-0.467-1.047-0.467-0.9010.962-0.467-0.3040.067-0.304-1.047-0.0420.1651.043-0.5590.449-0.304
101.099-0.7731.003-0.467-0.304-1.218-1.686-0.3820.211-0.382-0.1020.0670.067-1.2180.413-0.66
110.7760.3370.724-0.901-0.559-1.218-2.594-0.2320.4490.0140.581-0.042-1.047-0.559-0.1650.117
12-2.04-0.3041.299-2.04-0.7730.611-0.773-0.66-3.937-0.7731.372-1.047-2.594-0.3820.918-3.937
13-3.937-3.937-3.937-0.467-3.937-2.594-3.9371.284-1.425-0.901-2.042.282-2.594-2.04-2.594-0.304
14-3.937-2.594-1.686-2.594-3.937-3.937-0.559-3.937-3.937-3.937-1.686-3.937-3.937-0.5592.647-2.594
15-3.937-3.937-3.937-3.937-3.937-3.937-3.937-0.4670.6410.165-0.3822.424-2.594-3.937-3.937-2.594
16-3.937-0.7730.297-1.686-1.686-1.686-1.047-0.66-3.937-2.04-0.66-2.594-1.047-0.1022.1880.611
17-0.773-3.937-2.594-3.9370.413-2.594-2.594-3.9372.348-1.425-1.047-2.5940.826-3.937-2.594-1.425
182.288-0.1650.9620.337-2.04-2.594-2.594-2.594-1.047-2.04-3.937-2.594-2.04-3.937-1.686-3.937
191.515-0.3040.3371.329-1.218-1.425-3.937-0.66-0.232-0.66-0.232-0.232-1.047-0.901-0.901-0.901
20-0.5590.0140.1651.17-1.425-2.594-2.5940.413-0.773-1.218-0.7730.337-1.218-0.1650.1171.17
21-1.686-0.382-0.66-1.686-0.382-0.382-1.686-0.3820.165-0.382-0.773-0.660.0671.1530.851.023
22-1.6860.117-0.165-0.0420.3370.896-2.040.211-0.559-0.102-0.1650.165-1.2180.2970.611-0.382
23-0.66-0.467-0.165-0.773-0.3040.376-0.5591.118-0.382-0.5590.413-0.102-0.559-0.0420.1650.297
24-0.66-0.304-0.232-0.7730.413-0.467-1.2180.165-0.3820.449-0.3040.117-1.686-0.3040.6971.043
25-0.467-0.1650.211-1.6860.337-0.773-0.102-0.102-0.165-0.5590.376-0.0420.483-1.2181.003-0.042
260.2970.5170.165-1.218-0.232-0.559-2.04-0.3820.6970.5490.611-0.304-1.047-0.9010.1650.067