We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorT
ModelBRAC_MOUSE.H11MO.1.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
1
ConsensusdvbSTGTSWRdKb
Best auROC (human)0.643
Best auROC (mouse)0.755
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)10
Aligned words500
TF familyBrachyury-related factors {6.5.1}
TF subfamilyT (Brachyury) {6.5.1.0.1}
MGIMGI:98472
EntrezGeneGeneID:20997
(SSTAR profile)
UniProt IDBRAC_MOUSE
UniProt ACP20293
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.44021
0.0005 6.23796
0.0001 7.8512450000000005
GTEx tissue expression atlas T expression
Motifs in JASPAR
PCM
ACGT
01133.042.073.0252.0
02126.079.0256.039.0
0381.084.0113.0222.0
0416.0263.0200.021.0
054.013.03.0480.0
060.09.0474.017.0
0714.018.016.0452.0
0811.0210.0243.036.0
09380.016.020.084.0
10350.065.066.019.0
11118.052.056.0274.0
1218.057.063.0362.0
1333.0197.082.0188.0
PWM
ACGT
010.061-1.067-0.5290.695
020.008-0.4520.711-1.138
03-0.427-0.392-0.10.569
04-1.9750.7370.465-1.725
05-3.126-2.163-3.3251.336
06-4.4-2.4841.324-1.92
07-2.096-1.868-1.9751.276
08-2.3110.5140.659-1.215
091.104-1.975-1.77-0.392
101.022-0.643-0.628-1.818
11-0.057-0.86-0.7880.778
12-1.868-0.771-0.6731.055
13-1.2980.45-0.4150.404