Model info
| Transcription factor | T | ||||||||
| Model | BRAC_MOUSE.H11MO.1.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | C | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dvbSTGTSWRdKb | ||||||||
| Best auROC (human) | 0.643 | ||||||||
| Best auROC (mouse) | 0.755 | ||||||||
| Peak sets in benchmark (human) | 9 | ||||||||
| Peak sets in benchmark (mouse) | 10 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Brachyury-related factors {6.5.1} | ||||||||
| TF subfamily | T (Brachyury) {6.5.1.0.1} | ||||||||
| MGI | MGI:98472 | ||||||||
| EntrezGene | GeneID:20997 (SSTAR profile) | ||||||||
| UniProt ID | BRAC_MOUSE | ||||||||
| UniProt AC | P20293 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | T expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 133.0 | 42.0 | 73.0 | 252.0 |
| 02 | 126.0 | 79.0 | 256.0 | 39.0 |
| 03 | 81.0 | 84.0 | 113.0 | 222.0 |
| 04 | 16.0 | 263.0 | 200.0 | 21.0 |
| 05 | 4.0 | 13.0 | 3.0 | 480.0 |
| 06 | 0.0 | 9.0 | 474.0 | 17.0 |
| 07 | 14.0 | 18.0 | 16.0 | 452.0 |
| 08 | 11.0 | 210.0 | 243.0 | 36.0 |
| 09 | 380.0 | 16.0 | 20.0 | 84.0 |
| 10 | 350.0 | 65.0 | 66.0 | 19.0 |
| 11 | 118.0 | 52.0 | 56.0 | 274.0 |
| 12 | 18.0 | 57.0 | 63.0 | 362.0 |
| 13 | 33.0 | 197.0 | 82.0 | 188.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.061 | -1.067 | -0.529 | 0.695 |
| 02 | 0.008 | -0.452 | 0.711 | -1.138 |
| 03 | -0.427 | -0.392 | -0.1 | 0.569 |
| 04 | -1.975 | 0.737 | 0.465 | -1.725 |
| 05 | -3.126 | -2.163 | -3.325 | 1.336 |
| 06 | -4.4 | -2.484 | 1.324 | -1.92 |
| 07 | -2.096 | -1.868 | -1.975 | 1.276 |
| 08 | -2.311 | 0.514 | 0.659 | -1.215 |
| 09 | 1.104 | -1.975 | -1.77 | -0.392 |
| 10 | 1.022 | -0.643 | -0.628 | -1.818 |
| 11 | -0.057 | -0.86 | -0.788 | 0.778 |
| 12 | -1.868 | -0.771 | -0.673 | 1.055 |
| 13 | -1.298 | 0.45 | -0.415 | 0.404 |