We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorBRCA1
(GeneCards)
ModelBRCA1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length9
Quality
D
Motif rank
0
ConsensusbKKbKGTTG
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words72
TF family
TF subfamily
HGNCHGNC:1100
EntrezGeneGeneID:672
(SSTAR profile)
UniProt IDBRCA1_HUMAN
UniProt ACP38398
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.37613
0.0005 5.996
0.0001 7.243515
GTEx tissue expression atlas BRCA1 expression
ReMap ChIP-seq dataset list BRCA1 datasets
Motifs in JASPAR
PCM
ACGT
0110.45314.31121.0826.727
0213.750.019.99338.827
032.0349.08411.11950.333
044.06925.00934.9698.524
052.03410.87432.72526.938
060.00.063.179.4
070.02.0340.070.536
080.00.00.072.57
094.5775.31460.1372.543
PWM
ACGT
01-0.511-0.2220.1420.369
02-0.26-2.8870.0920.731
03-1.822-0.638-0.4550.984
04-1.3190.3060.629-0.694
05-1.822-0.4750.5650.377
06-2.887-2.8871.207-0.607
07-2.887-1.822-2.8871.316
08-2.887-2.887-2.8871.344
09-1.224-1.1021.159-1.671