Transcription factor | BRCA1 (GeneCards) | ||||||||
Model | BRCA1_HUMAN.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 9 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | bKKbKGTTG | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 72 | ||||||||
TF family | |||||||||
TF subfamily | |||||||||
HGNC | HGNC:1100 | ||||||||
EntrezGene | GeneID:672 (SSTAR profile) | ||||||||
UniProt ID | BRCA1_HUMAN | ||||||||
UniProt AC | P38398 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | BRCA1 expression | ||||||||
ReMap ChIP-seq dataset list | BRCA1 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 10.453 | 14.311 | 21.08 | 26.727 |
02 | 13.75 | 0.0 | 19.993 | 38.827 |
03 | 2.034 | 9.084 | 11.119 | 50.333 |
04 | 4.069 | 25.009 | 34.969 | 8.524 |
05 | 2.034 | 10.874 | 32.725 | 26.938 |
06 | 0.0 | 0.0 | 63.17 | 9.4 |
07 | 0.0 | 2.034 | 0.0 | 70.536 |
08 | 0.0 | 0.0 | 0.0 | 72.57 |
09 | 4.577 | 5.314 | 60.137 | 2.543 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.511 | -0.222 | 0.142 | 0.369 |
02 | -0.26 | -2.887 | 0.092 | 0.731 |
03 | -1.822 | -0.638 | -0.455 | 0.984 |
04 | -1.319 | 0.306 | 0.629 | -0.694 |
05 | -1.822 | -0.475 | 0.565 | 0.377 |
06 | -2.887 | -2.887 | 1.207 | -0.607 |
07 | -2.887 | -1.822 | -2.887 | 1.316 |
08 | -2.887 | -2.887 | -2.887 | 1.344 |
09 | -1.224 | -1.102 | 1.159 | -1.671 |