CDC5L_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

CDC5L
(GeneCards)

Model

CDC5L_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

15

Quality

D

Motif rank

0

Consensus

vbGnKdTAAYRWAWb

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

10

TF family

Myb/SANT domain factors {3.5.1}

TF subfamily

Myb-like factors {3.5.1.1}

HGNC

EntrezGene

GeneID:988
(SSTAR profile)

UniProt ID

UniProt AC

Q99459
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.31386
0.0005	5.94516
0.0001	7.27229

GTEx tissue expression atlas

CDC5L expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

PCM

	A	C	G	T
01	1.5	1.5	6.5	0.5
02	0.0	2.0	4.0	4.0
03	2.0	0.0	8.0	0.0
04	5.0	1.0	1.0	3.0
05	0.0	1.0	3.0	6.0
06	2.0	0.0	2.0	6.0
07	1.0	0.0	0.0	9.0
08	9.0	0.0	1.0	0.0
09	8.0	0.0	0.0	2.0
10	1.0	6.0	0.0	3.0
11	6.0	0.0	3.0	1.0
12	2.0	1.0	0.0	7.0
13	8.0	1.0	1.0	0.0
14	6.0	0.0	1.0	3.0
15	0.75	2.75	1.75	4.75

PWM

	A	C	G	T
01	-0.393	-0.393	0.833	-1.051
02	-1.676	-0.177	0.397	0.397
03	-0.177	-1.676	1.025	-1.676
04	0.595	-0.669	-0.669	0.151
05	-1.676	-0.669	0.151	0.76
06	-0.177	-1.676	-0.177	0.76
07	-0.669	-1.676	-1.676	1.136
08	1.136	-1.676	-0.669	-1.676
09	1.025	-1.676	-1.676	-0.177
10	-0.669	0.76	-1.676	0.151
11	0.76	-1.676	0.151	-0.669
12	-0.177	-0.669	-1.676	0.901
13	1.025	-0.669	-0.669	-1.676
14	0.76	-1.676	-0.669	0.151
15	-0.842	0.078	-0.28	0.549