Model info
| Transcription factor | CDC5L (GeneCards) | ||||||||
| Model | CDC5L_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 15 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vbGnKdTAAYRWAWb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 10 | ||||||||
| TF family | Myb/SANT domain factors {3.5.1} | ||||||||
| TF subfamily | Myb-like factors {3.5.1.1} | ||||||||
| HGNC | HGNC:1743 | ||||||||
| EntrezGene | GeneID:988 (SSTAR profile) | ||||||||
| UniProt ID | CDC5L_HUMAN | ||||||||
| UniProt AC | Q99459 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | CDC5L expression | ||||||||
| ReMap ChIP-seq dataset list | CDC5L datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.5 | 1.5 | 6.5 | 0.5 |
| 02 | 0.0 | 2.0 | 4.0 | 4.0 |
| 03 | 2.0 | 0.0 | 8.0 | 0.0 |
| 04 | 5.0 | 1.0 | 1.0 | 3.0 |
| 05 | 0.0 | 1.0 | 3.0 | 6.0 |
| 06 | 2.0 | 0.0 | 2.0 | 6.0 |
| 07 | 1.0 | 0.0 | 0.0 | 9.0 |
| 08 | 9.0 | 0.0 | 1.0 | 0.0 |
| 09 | 8.0 | 0.0 | 0.0 | 2.0 |
| 10 | 1.0 | 6.0 | 0.0 | 3.0 |
| 11 | 6.0 | 0.0 | 3.0 | 1.0 |
| 12 | 2.0 | 1.0 | 0.0 | 7.0 |
| 13 | 8.0 | 1.0 | 1.0 | 0.0 |
| 14 | 6.0 | 0.0 | 1.0 | 3.0 |
| 15 | 0.75 | 2.75 | 1.75 | 4.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.393 | -0.393 | 0.833 | -1.051 |
| 02 | -1.676 | -0.177 | 0.397 | 0.397 |
| 03 | -0.177 | -1.676 | 1.025 | -1.676 |
| 04 | 0.595 | -0.669 | -0.669 | 0.151 |
| 05 | -1.676 | -0.669 | 0.151 | 0.76 |
| 06 | -0.177 | -1.676 | -0.177 | 0.76 |
| 07 | -0.669 | -1.676 | -1.676 | 1.136 |
| 08 | 1.136 | -1.676 | -0.669 | -1.676 |
| 09 | 1.025 | -1.676 | -1.676 | -0.177 |
| 10 | -0.669 | 0.76 | -1.676 | 0.151 |
| 11 | 0.76 | -1.676 | 0.151 | -0.669 |
| 12 | -0.177 | -0.669 | -1.676 | 0.901 |
| 13 | 1.025 | -0.669 | -0.669 | -1.676 |
| 14 | 0.76 | -1.676 | -0.669 | 0.151 |
| 15 | -0.842 | 0.078 | -0.28 | 0.549 |