We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorCDX1
(GeneCards)
ModelCDX1_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length8
Quality
C
Motif rank
0
ConsensushTTKAWGd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words30
TF familyHOX-related factors {3.1.1}
TF subfamilyCDX (Caudal type homeobox) {3.1.1.9}
HGNCHGNC:1805
EntrezGeneGeneID:1044
(SSTAR profile)
UniProt IDCDX1_HUMAN
UniProt ACP47902
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.4783
0.0005 5.931900000000001
0.0001 6.798299999999999
GTEx tissue expression atlas CDX1 expression
ReMap ChIP-seq dataset list CDX1 datasets
Motifs in JASPAR
PCM
ACGT
0113.9787.3121.4527.258
020.9680.02.90326.129
030.9680.00.96828.065
041.9351.6133.87122.581
0524.1940.04.8390.968
067.4192.7960.96818.817
076.1830.023.8170.0
085.9952.98410.18810.833
PWM
ACGT
010.574-0.023-1.289-0.029
02-1.525-2.284-0.81.173
03-1.525-2.284-1.5251.242
04-1.098-1.221-0.571.032
051.098-2.284-0.384-1.525
06-0.01-0.829-1.5250.857
07-0.172-2.2841.083-2.284
08-0.199-0.7780.2790.336