Model info
| Transcription factor | Cdx1 | ||||||||
| Model | CDX1_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 8 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hTTKAWGd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 30 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | CDX (Caudal type homeobox) {3.1.1.9} | ||||||||
| MGI | MGI:88360 | ||||||||
| EntrezGene | GeneID:12590 (SSTAR profile) | ||||||||
| UniProt ID | CDX1_MOUSE | ||||||||
| UniProt AC | P18111 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Cdx1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 13.978 | 7.312 | 1.452 | 7.258 |
| 02 | 0.968 | 0.0 | 2.903 | 26.129 |
| 03 | 0.968 | 0.0 | 0.968 | 28.065 |
| 04 | 1.935 | 1.613 | 3.871 | 22.581 |
| 05 | 24.194 | 0.0 | 4.839 | 0.968 |
| 06 | 7.419 | 2.796 | 0.968 | 18.817 |
| 07 | 6.183 | 0.0 | 23.817 | 0.0 |
| 08 | 5.995 | 2.984 | 10.188 | 10.833 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.574 | -0.023 | -1.289 | -0.029 |
| 02 | -1.525 | -2.284 | -0.8 | 1.173 |
| 03 | -1.525 | -2.284 | -1.525 | 1.242 |
| 04 | -1.098 | -1.221 | -0.57 | 1.032 |
| 05 | 1.098 | -2.284 | -0.384 | -1.525 |
| 06 | -0.01 | -0.829 | -1.525 | 0.857 |
| 07 | -0.172 | -2.284 | 1.083 | -2.284 |
| 08 | -0.199 | -0.778 | 0.279 | 0.336 |