Transcription factor | CDX2 (GeneCards) | ||||||||
Model | CDX2_HUMAN.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 14 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nbddbTTTATKRYn | ||||||||
Best auROC (human) | 0.931 | ||||||||
Best auROC (mouse) | 0.989 | ||||||||
Peak sets in benchmark (human) | 13 | ||||||||
Peak sets in benchmark (mouse) | 23 | ||||||||
Aligned words | 340 | ||||||||
TF family | HOX-related factors {3.1.1} | ||||||||
TF subfamily | CDX (Caudal type homeobox) {3.1.1.9} | ||||||||
HGNC | HGNC:1806 | ||||||||
EntrezGene | GeneID:1045 (SSTAR profile) | ||||||||
UniProt ID | CDX2_HUMAN | ||||||||
UniProt AC | Q99626 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | CDX2 expression | ||||||||
ReMap ChIP-seq dataset list | CDX2 datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 16.0 | 14.0 | 35.0 | 61.0 | 13.0 | 15.0 | 9.0 | 24.0 | 1.0 | 21.0 | 18.0 | 27.0 | 10.0 | 26.0 | 25.0 | 24.0 |
02 | 11.0 | 6.0 | 14.0 | 9.0 | 21.0 | 21.0 | 5.0 | 29.0 | 21.0 | 22.0 | 20.0 | 24.0 | 13.0 | 13.0 | 35.0 | 75.0 |
03 | 14.0 | 11.0 | 26.0 | 15.0 | 13.0 | 11.0 | 7.0 | 31.0 | 10.0 | 9.0 | 37.0 | 18.0 | 29.0 | 22.0 | 70.0 | 16.0 |
04 | 4.0 | 15.0 | 16.0 | 31.0 | 13.0 | 7.0 | 2.0 | 31.0 | 18.0 | 27.0 | 19.0 | 76.0 | 11.0 | 11.0 | 15.0 | 43.0 |
05 | 0.0 | 1.0 | 1.0 | 44.0 | 3.0 | 0.0 | 0.0 | 57.0 | 0.0 | 0.0 | 0.0 | 52.0 | 6.0 | 3.0 | 0.0 | 172.0 |
06 | 0.0 | 0.0 | 0.0 | 9.0 | 0.0 | 1.0 | 0.0 | 3.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 2.0 | 0.0 | 323.0 |
07 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 | 0.0 | 0.0 | 0.0 | 0.0 | 7.0 | 0.0 | 4.0 | 325.0 |
08 | 7.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 | 328.0 | 0.0 | 0.0 | 0.0 |
09 | 0.0 | 53.0 | 5.0 | 281.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
10 | 0.0 | 0.0 | 0.0 | 0.0 | 31.0 | 0.0 | 13.0 | 9.0 | 0.0 | 0.0 | 3.0 | 2.0 | 33.0 | 3.0 | 151.0 | 94.0 |
11 | 26.0 | 2.0 | 36.0 | 0.0 | 3.0 | 0.0 | 0.0 | 0.0 | 83.0 | 2.0 | 81.0 | 1.0 | 30.0 | 1.0 | 72.0 | 2.0 |
12 | 5.0 | 108.0 | 7.0 | 22.0 | 0.0 | 5.0 | 0.0 | 0.0 | 7.0 | 119.0 | 17.0 | 46.0 | 1.0 | 2.0 | 0.0 | 0.0 |
13 | 3.0 | 4.0 | 1.0 | 5.0 | 70.0 | 69.0 | 13.0 | 82.0 | 2.0 | 15.0 | 6.0 | 1.0 | 16.0 | 10.0 | 24.0 | 18.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.275 | -0.406 | 0.495 | 1.046 | -0.478 | -0.338 | -0.834 | 0.123 | -2.76 | -0.009 | -0.16 | 0.239 | -0.732 | 0.202 | 0.163 | 0.123 |
02 | -0.64 | -1.22 | -0.406 | -0.834 | -0.009 | -0.009 | -1.391 | 0.309 | -0.009 | 0.037 | -0.057 | 0.123 | -0.478 | -0.478 | 0.495 | 1.252 |
03 | -0.406 | -0.64 | 0.202 | -0.338 | -0.478 | -0.64 | -1.074 | 0.375 | -0.732 | -0.834 | 0.55 | -0.16 | 0.309 | 0.037 | 1.183 | -0.275 |
04 | -1.597 | -0.338 | -0.275 | 0.375 | -0.478 | -1.074 | -2.21 | 0.375 | -0.16 | 0.239 | -0.107 | 1.265 | -0.64 | -0.64 | -0.338 | 0.699 |
05 | -4.081 | -2.76 | -2.76 | 0.722 | -1.857 | -4.081 | -4.081 | 0.979 | -4.081 | -4.081 | -4.081 | 0.888 | -1.22 | -1.857 | -4.081 | 2.079 |
06 | -4.081 | -4.081 | -4.081 | -0.834 | -4.081 | -2.76 | -4.081 | -1.857 | -4.081 | -4.081 | -4.081 | -2.76 | -4.081 | -2.21 | -4.081 | 2.708 |
07 | -4.081 | -4.081 | -4.081 | -4.081 | -4.081 | -4.081 | -4.081 | -1.857 | -4.081 | -4.081 | -4.081 | -4.081 | -1.074 | -4.081 | -1.597 | 2.714 |
08 | -1.074 | -4.081 | -4.081 | -4.081 | -4.081 | -4.081 | -4.081 | -4.081 | -1.597 | -4.081 | -4.081 | -4.081 | 2.724 | -4.081 | -4.081 | -4.081 |
09 | -4.081 | 0.907 | -1.391 | 2.569 | -4.081 | -4.081 | -4.081 | -4.081 | -4.081 | -4.081 | -4.081 | -4.081 | -4.081 | -4.081 | -4.081 | -4.081 |
10 | -4.081 | -4.081 | -4.081 | -4.081 | 0.375 | -4.081 | -0.478 | -0.834 | -4.081 | -4.081 | -1.857 | -2.21 | 0.437 | -1.857 | 1.949 | 1.477 |
11 | 0.202 | -2.21 | 0.523 | -4.081 | -1.857 | -4.081 | -4.081 | -4.081 | 1.353 | -2.21 | 1.328 | -2.76 | 0.343 | -2.76 | 1.211 | -2.21 |
12 | -1.391 | 1.615 | -1.074 | 0.037 | -4.081 | -1.391 | -4.081 | -4.081 | -1.074 | 1.712 | -0.216 | 0.766 | -2.76 | -2.21 | -4.081 | -4.081 |
13 | -1.857 | -1.597 | -2.76 | -1.391 | 1.183 | 1.169 | -0.478 | 1.341 | -2.21 | -0.338 | -1.22 | -2.76 | -0.275 | -0.732 | 0.123 | -0.16 |