We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorCDX2
(GeneCards)
ModelCDX2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusnbddbTTTATKRYn
Best auROC (human)0.931
Best auROC (mouse)0.989
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)23
Aligned words340
TF familyHOX-related factors {3.1.1}
TF subfamilyCDX (Caudal type homeobox) {3.1.1.9}
HGNCHGNC:1806
EntrezGeneGeneID:1045
(SSTAR profile)
UniProt IDCDX2_HUMAN
UniProt ACQ99626
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.220360000000001
0.0005 12.44426
0.0001 16.492315
GTEx tissue expression atlas CDX2 expression
ReMap ChIP-seq dataset list CDX2 datasets
Motifs in JASPAR
MA0465.1 (CDX2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0116.014.035.061.013.015.09.024.01.021.018.027.010.026.025.024.0
0211.06.014.09.021.021.05.029.021.022.020.024.013.013.035.075.0
0314.011.026.015.013.011.07.031.010.09.037.018.029.022.070.016.0
044.015.016.031.013.07.02.031.018.027.019.076.011.011.015.043.0
050.01.01.044.03.00.00.057.00.00.00.052.06.03.00.0172.0
060.00.00.09.00.01.00.03.00.00.00.01.00.02.00.0323.0
070.00.00.00.00.00.00.03.00.00.00.00.07.00.04.0325.0
087.00.00.00.00.00.00.00.04.00.00.00.0328.00.00.00.0
090.053.05.0281.00.00.00.00.00.00.00.00.00.00.00.00.0
100.00.00.00.031.00.013.09.00.00.03.02.033.03.0151.094.0
1126.02.036.00.03.00.00.00.083.02.081.01.030.01.072.02.0
125.0108.07.022.00.05.00.00.07.0119.017.046.01.02.00.00.0
133.04.01.05.070.069.013.082.02.015.06.01.016.010.024.018.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.275-0.4060.4951.046-0.478-0.338-0.8340.123-2.76-0.009-0.160.239-0.7320.2020.1630.123
02-0.64-1.22-0.406-0.834-0.009-0.009-1.3910.309-0.0090.037-0.0570.123-0.478-0.4780.4951.252
03-0.406-0.640.202-0.338-0.478-0.64-1.0740.375-0.732-0.8340.55-0.160.3090.0371.183-0.275
04-1.597-0.338-0.2750.375-0.478-1.074-2.210.375-0.160.239-0.1071.265-0.64-0.64-0.3380.699
05-4.081-2.76-2.760.722-1.857-4.081-4.0810.979-4.081-4.081-4.0810.888-1.22-1.857-4.0812.079
06-4.081-4.081-4.081-0.834-4.081-2.76-4.081-1.857-4.081-4.081-4.081-2.76-4.081-2.21-4.0812.708
07-4.081-4.081-4.081-4.081-4.081-4.081-4.081-1.857-4.081-4.081-4.081-4.081-1.074-4.081-1.5972.714
08-1.074-4.081-4.081-4.081-4.081-4.081-4.081-4.081-1.597-4.081-4.081-4.0812.724-4.081-4.081-4.081
09-4.0810.907-1.3912.569-4.081-4.081-4.081-4.081-4.081-4.081-4.081-4.081-4.081-4.081-4.081-4.081
10-4.081-4.081-4.081-4.0810.375-4.081-0.478-0.834-4.081-4.081-1.857-2.210.437-1.8571.9491.477
110.202-2.210.523-4.081-1.857-4.081-4.081-4.0811.353-2.211.328-2.760.343-2.761.211-2.21
12-1.3911.615-1.0740.037-4.081-1.391-4.081-4.081-1.0741.712-0.2160.766-2.76-2.21-4.081-4.081
13-1.857-1.597-2.76-1.3911.1831.169-0.4781.341-2.21-0.338-1.22-2.76-0.275-0.7320.123-0.16