Check the newest release v13
Model info
Transcription factorCDX2
(GeneCards)
ModelCDX2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusnbddbTTTATKRYn
Best auROC (human)0.931
Best auROC (mouse)0.989
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)23
Aligned words340
TF familyHOX-related factors {3.1.1}
TF subfamilyCDX (Caudal type homeobox) {3.1.1.9}
HGNCHGNC:1806
EntrezGeneGeneID:1045
(SSTAR profile)
UniProt IDCDX2_HUMAN
UniProt ACQ99626
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.220360000000001
0.0005 12.44426
0.0001 16.492315
GTEx tissue expression atlas CDX2 expression
ReMap ChIP-seq dataset list CDX2 datasets
Motifs in JASPAR
MA0465.1 (CDX2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0116.014.035.061.013.015.09.024.01.021.018.027.010.026.025.024.0
0211.06.014.09.021.021.05.029.021.022.020.024.013.013.035.075.0
0314.011.026.015.013.011.07.031.010.09.037.018.029.022.070.016.0
044.015.016.031.013.07.02.031.018.027.019.076.011.011.015.043.0
050.01.01.044.03.00.00.057.00.00.00.052.06.03.00.0172.0
060.00.00.09.00.01.00.03.00.00.00.01.00.02.00.0323.0
070.00.00.00.00.00.00.03.00.00.00.00.07.00.04.0325.0
087.00.00.00.00.00.00.00.04.00.00.00.0328.00.00.00.0
090.053.05.0281.00.00.00.00.00.00.00.00.00.00.00.00.0
100.00.00.00.031.00.013.09.00.00.03.02.033.03.0151.094.0
1126.02.036.00.03.00.00.00.083.02.081.01.030.01.072.02.0
125.0108.07.022.00.05.00.00.07.0119.017.046.01.02.00.00.0
133.04.01.05.070.069.013.082.02.015.06.01.016.010.024.018.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.275-0.4060.4951.046-0.478-0.338-0.8340.123-2.76-0.009-0.160.239-0.7320.2020.1630.123
02-0.64-1.22-0.406-0.834-0.009-0.009-1.3910.309-0.0090.037-0.0570.123-0.478-0.4780.4951.252
03-0.406-0.640.202-0.338-0.478-0.64-1.0740.375-0.732-0.8340.55-0.160.3090.0371.183-0.275
04-1.597-0.338-0.2750.375-0.478-1.074-2.210.375-0.160.239-0.1071.265-0.64-0.64-0.3380.699
05-4.081-2.76-2.760.722-1.857-4.081-4.0810.979-4.081-4.081-4.0810.888-1.22-1.857-4.0812.079
06-4.081-4.081-4.081-0.834-4.081-2.76-4.081-1.857-4.081-4.081-4.081-2.76-4.081-2.21-4.0812.708
07-4.081-4.081-4.081-4.081-4.081-4.081-4.081-1.857-4.081-4.081-4.081-4.081-1.074-4.081-1.5972.714
08-1.074-4.081-4.081-4.081-4.081-4.081-4.081-4.081-1.597-4.081-4.081-4.0812.724-4.081-4.081-4.081
09-4.0810.907-1.3912.569-4.081-4.081-4.081-4.081-4.081-4.081-4.081-4.081-4.081-4.081-4.081-4.081
10-4.081-4.081-4.081-4.0810.375-4.081-0.478-0.834-4.081-4.081-1.857-2.210.437-1.8571.9491.477
110.202-2.210.523-4.081-1.857-4.081-4.081-4.0811.353-2.211.328-2.760.343-2.761.211-2.21
12-1.3911.615-1.0740.037-4.081-1.391-4.081-4.081-1.0741.712-0.2160.766-2.76-2.21-4.081-4.081
13-1.857-1.597-2.76-1.3911.1831.169-0.4781.341-2.21-0.338-1.22-2.76-0.275-0.7320.123-0.16