Model info
| Transcription factor | CDX2 (GeneCards) | ||||||||
| Model | CDX2_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dTTbATKGShbY | ||||||||
| Best auROC (human) | 0.923 | ||||||||
| Best auROC (mouse) | 0.982 | ||||||||
| Peak sets in benchmark (human) | 13 | ||||||||
| Peak sets in benchmark (mouse) | 23 | ||||||||
| Aligned words | 151 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | CDX (Caudal type homeobox) {3.1.1.9} | ||||||||
| HGNC | HGNC:1806 | ||||||||
| EntrezGene | GeneID:1045 (SSTAR profile) | ||||||||
| UniProt ID | CDX2_HUMAN | ||||||||
| UniProt AC | Q99626 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | CDX2 expression | ||||||||
| ReMap ChIP-seq dataset list | CDX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 23.0 | 18.0 | 32.0 | 78.0 |
| 02 | 9.0 | 11.0 | 9.0 | 122.0 |
| 03 | 16.0 | 0.0 | 10.0 | 125.0 |
| 04 | 13.0 | 37.0 | 26.0 | 75.0 |
| 05 | 149.0 | 1.0 | 1.0 | 0.0 |
| 06 | 1.0 | 8.0 | 2.0 | 140.0 |
| 07 | 7.0 | 0.0 | 47.0 | 97.0 |
| 08 | 28.0 | 1.0 | 122.0 | 0.0 |
| 09 | 2.0 | 115.0 | 20.0 | 14.0 |
| 10 | 40.0 | 32.0 | 13.0 | 66.0 |
| 11 | 21.0 | 30.0 | 53.0 | 47.0 |
| 12 | 2.0 | 35.0 | 26.0 | 88.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.475 | -0.706 | -0.159 | 0.709 |
| 02 | -1.336 | -1.158 | -1.336 | 1.151 |
| 03 | -0.816 | -3.437 | -1.243 | 1.175 |
| 04 | -1.007 | -0.019 | -0.358 | 0.67 |
| 05 | 1.349 | -2.851 | -2.851 | -3.437 |
| 06 | -2.851 | -1.439 | -2.484 | 1.287 |
| 07 | -1.553 | -3.437 | 0.213 | 0.924 |
| 08 | -0.288 | -2.851 | 1.151 | -3.437 |
| 09 | -2.484 | 1.092 | -0.607 | -0.939 |
| 10 | 0.056 | -0.159 | -1.007 | 0.545 |
| 11 | -0.561 | -0.222 | 0.33 | 0.213 |
| 12 | -2.484 | -0.073 | -0.358 | 0.828 |