We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorCDX2
(GeneCards)
ModelCDX2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusdTTbATKGShbY
Best auROC (human)0.923
Best auROC (mouse)0.982
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)23
Aligned words151
TF familyHOX-related factors {3.1.1}
TF subfamilyCDX (Caudal type homeobox) {3.1.1.9}
HGNCHGNC:1806
EntrezGeneGeneID:1045
(SSTAR profile)
UniProt IDCDX2_HUMAN
UniProt ACQ99626
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.6422799999999995
0.0005 6.439674999999999
0.0001 8.029655
GTEx tissue expression atlas CDX2 expression
ReMap ChIP-seq dataset list CDX2 datasets
Motifs in JASPAR
MA0465.1 (CDX2; Homo sapiens)
PCM
ACGT
0123.018.032.078.0
029.011.09.0122.0
0316.00.010.0125.0
0413.037.026.075.0
05149.01.01.00.0
061.08.02.0140.0
077.00.047.097.0
0828.01.0122.00.0
092.0115.020.014.0
1040.032.013.066.0
1121.030.053.047.0
122.035.026.088.0
PWM
ACGT
01-0.475-0.706-0.1590.709
02-1.336-1.158-1.3361.151
03-0.816-3.437-1.2431.175
04-1.007-0.019-0.3580.67
051.349-2.851-2.851-3.437
06-2.851-1.439-2.4841.287
07-1.553-3.4370.2130.924
08-0.288-2.8511.151-3.437
09-2.4841.092-0.607-0.939
100.056-0.159-1.0070.545
11-0.561-0.2220.330.213
12-2.484-0.073-0.3580.828