We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorCdx2
ModelCDX2_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusnnbTTTATKRShbh
Best auROC (human)0.927
Best auROC (mouse)0.989
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)23
Aligned words500
TF familyHOX-related factors {3.1.1}
TF subfamilyCDX (Caudal type homeobox) {3.1.1.9}
MGIMGI:88361
EntrezGeneGeneID:12591
(SSTAR profile)
UniProt IDCDX2_MOUSE
UniProt ACP43241
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.823060000000002
0.0005 12.22381
0.0001 16.21923
GTEx tissue expression atlas Cdx2 expression
Motifs in JASPAR
MA0465.1 (CDX2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0120.024.044.034.025.022.07.035.014.031.040.035.026.023.0100.020.0
025.017.014.049.017.017.02.064.015.026.032.0118.010.030.027.057.0
030.00.01.046.01.01.01.087.01.03.01.070.01.00.05.0282.0
040.00.00.03.00.01.00.03.00.01.00.07.01.00.00.0484.0
050.00.00.01.00.00.00.02.00.00.00.00.05.00.00.0492.0
065.00.00.00.00.00.00.00.00.00.00.00.0493.02.00.00.0
070.066.08.0424.00.00.00.02.00.00.00.00.00.00.00.00.0
080.00.00.00.032.01.09.024.01.00.05.02.039.02.0209.0176.0
0925.00.045.02.03.00.00.00.093.08.0110.012.048.03.0142.09.0
103.0123.026.017.00.010.00.01.017.0182.055.043.02.015.04.02.0
114.04.07.07.059.0151.010.0110.010.034.024.017.09.023.021.010.0
126.031.029.016.042.051.011.0108.06.021.016.019.014.037.046.047.0
1310.021.08.029.037.028.06.069.014.027.033.028.028.062.034.066.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.439-0.260.3390.083-0.22-0.346-1.4540.112-0.788-0.0080.2440.112-0.181-0.3021.155-0.439
02-1.77-0.599-0.7880.445-0.599-0.599-2.5840.711-0.721-0.1810.0231.32-1.114-0.04-0.1440.595
03-4.4-4.4-3.1260.383-3.126-3.126-3.1261.016-3.126-2.234-3.1260.8-3.126-4.4-1.772.189
04-4.4-4.4-4.4-2.234-4.4-3.126-4.4-2.234-4.4-3.126-4.4-1.454-3.126-4.4-4.42.729
05-4.4-4.4-4.4-3.126-4.4-4.4-4.4-2.584-4.4-4.4-4.4-4.4-1.77-4.4-4.42.745
06-1.77-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.747-2.584-4.4-4.4
07-4.40.741-1.3282.596-4.4-4.4-4.4-2.584-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
08-4.4-4.4-4.4-4.40.023-3.126-1.215-0.26-3.126-4.4-1.77-2.5840.219-2.5841.891.718
09-0.22-4.40.361-2.584-2.234-4.4-4.4-4.41.082-1.3281.25-0.9380.425-2.2341.504-1.215
10-2.2341.361-0.181-0.599-4.4-1.114-4.4-3.126-0.5991.7520.560.316-2.584-0.721-1.975-2.584
11-1.975-1.975-1.454-1.4540.631.565-1.1141.25-1.1140.083-0.26-0.599-1.215-0.302-0.392-1.114
12-1.6-0.008-0.074-0.6580.2930.485-1.0221.231-1.6-0.392-0.658-0.49-0.7880.1670.3830.404
13-1.114-0.392-1.328-0.0740.167-0.108-1.60.785-0.788-0.1440.054-0.108-0.1080.6790.0830.741