Model info
| Transcription factor | Cdx2 | ||||||||
| Model | CDX2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bTTTATKRYhbb | ||||||||
| Best auROC (human) | 0.916 | ||||||||
| Best auROC (mouse) | 0.99 | ||||||||
| Peak sets in benchmark (human) | 13 | ||||||||
| Peak sets in benchmark (mouse) | 23 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | CDX (Caudal type homeobox) {3.1.1.9} | ||||||||
| MGI | MGI:88361 | ||||||||
| EntrezGene | GeneID:12591 (SSTAR profile) | ||||||||
| UniProt ID | CDX2_MOUSE | ||||||||
| UniProt AC | P43241 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Cdx2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 59.0 | 81.0 | 65.0 | 295.0 |
| 02 | 9.0 | 4.0 | 6.0 | 481.0 |
| 03 | 4.0 | 6.0 | 1.0 | 489.0 |
| 04 | 17.0 | 9.0 | 10.0 | 464.0 |
| 05 | 475.0 | 9.0 | 8.0 | 8.0 |
| 06 | 1.0 | 31.0 | 6.0 | 462.0 |
| 07 | 56.0 | 3.0 | 230.0 | 211.0 |
| 08 | 193.0 | 6.0 | 281.0 | 20.0 |
| 09 | 19.0 | 377.0 | 31.0 | 73.0 |
| 10 | 62.0 | 215.0 | 20.0 | 203.0 |
| 11 | 57.0 | 125.0 | 80.0 | 238.0 |
| 12 | 46.0 | 113.0 | 61.0 | 280.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.737 | -0.427 | -0.643 | 0.852 |
| 02 | -2.484 | -3.126 | -2.819 | 1.338 |
| 03 | -3.126 | -2.819 | -3.903 | 1.355 |
| 04 | -1.92 | -2.484 | -2.394 | 1.303 |
| 05 | 1.326 | -2.484 | -2.584 | -2.584 |
| 06 | -3.903 | -1.358 | -2.819 | 1.298 |
| 07 | -0.788 | -3.325 | 0.604 | 0.519 |
| 08 | 0.43 | -2.819 | 0.803 | -1.77 |
| 09 | -1.818 | 1.096 | -1.358 | -0.529 |
| 10 | -0.689 | 0.537 | -1.77 | 0.48 |
| 11 | -0.771 | 0.0 | -0.439 | 0.638 |
| 12 | -0.979 | -0.1 | -0.705 | 0.8 |