Transcription factor | Cdx2 | ||||||||
Model | CDX2_MOUSE.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 12 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | bTTTATKRYhbb | ||||||||
Best auROC (human) | 0.916 | ||||||||
Best auROC (mouse) | 0.99 | ||||||||
Peak sets in benchmark (human) | 13 | ||||||||
Peak sets in benchmark (mouse) | 23 | ||||||||
Aligned words | 500 | ||||||||
TF family | HOX-related factors {3.1.1} | ||||||||
TF subfamily | CDX (Caudal type homeobox) {3.1.1.9} | ||||||||
MGI | MGI:88361 | ||||||||
EntrezGene | GeneID:12591 (SSTAR profile) | ||||||||
UniProt ID | CDX2_MOUSE | ||||||||
UniProt AC | P43241 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Cdx2 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 59.0 | 81.0 | 65.0 | 295.0 |
02 | 9.0 | 4.0 | 6.0 | 481.0 |
03 | 4.0 | 6.0 | 1.0 | 489.0 |
04 | 17.0 | 9.0 | 10.0 | 464.0 |
05 | 475.0 | 9.0 | 8.0 | 8.0 |
06 | 1.0 | 31.0 | 6.0 | 462.0 |
07 | 56.0 | 3.0 | 230.0 | 211.0 |
08 | 193.0 | 6.0 | 281.0 | 20.0 |
09 | 19.0 | 377.0 | 31.0 | 73.0 |
10 | 62.0 | 215.0 | 20.0 | 203.0 |
11 | 57.0 | 125.0 | 80.0 | 238.0 |
12 | 46.0 | 113.0 | 61.0 | 280.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.737 | -0.427 | -0.643 | 0.852 |
02 | -2.484 | -3.126 | -2.819 | 1.338 |
03 | -3.126 | -2.819 | -3.903 | 1.355 |
04 | -1.92 | -2.484 | -2.394 | 1.303 |
05 | 1.326 | -2.484 | -2.584 | -2.584 |
06 | -3.903 | -1.358 | -2.819 | 1.298 |
07 | -0.788 | -3.325 | 0.604 | 0.519 |
08 | 0.43 | -2.819 | 0.803 | -1.77 |
09 | -1.818 | 1.096 | -1.358 | -0.529 |
10 | -0.689 | 0.537 | -1.77 | 0.48 |
11 | -0.771 | 0.0 | -0.439 | 0.638 |
12 | -0.979 | -0.1 | -0.705 | 0.8 |