CEBPB_HUMAN.H11MO.0.A motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

CEBPB
(GeneCards)

Model

CEBPB_HUMAN.H11MO.0.A

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv11

Model length

12

Quality

A

Motif rank

0

Consensus

dRTTRhGCAAYv

Best auROC (human)

0.981

Best auROC (mouse)

0.985

Peak sets in benchmark (human)

65

Peak sets in benchmark (mouse)

158

Aligned words

457

TF family

C/EBP-related {1.1.8}

TF subfamily

C/EBP {1.1.8.1}

HGNC

EntrezGene

GeneID:1051
(SSTAR profile)

UniProt ID

UniProt AC

P17676
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	4.31214
0.0005	5.663345
0.0001	8.166715

GTEx tissue expression atlas

CEBPB expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0466.1 (CEBPB; Homo sapiens)

MA0466.2 (CEBPB; Homo sapiens)

PCM

	A	C	G	T
01	108.0	45.0	160.0	141.0
02	206.0	60.0	176.0	12.0
03	0.0	1.0	1.0	452.0
04	0.0	0.0	136.0	318.0
05	137.0	1.0	233.0	83.0
06	76.0	118.0	37.0	223.0
07	0.0	0.0	454.0	0.0
08	37.0	408.0	0.0	9.0
09	454.0	0.0	0.0	0.0
10	454.0	0.0	0.0	0.0
11	0.0	111.0	67.0	276.0
12	168.0	151.0	83.0	52.0

PWM

	A	C	G	T
01	-0.049	-0.905	0.339	0.214
02	0.59	-0.626	0.434	-2.14
03	-4.32	-3.817	-3.817	1.372
04	-4.32	-4.32	0.179	1.022
05	0.186	-3.817	0.712	-0.308
06	-0.395	0.038	-1.094	0.669
07	-4.32	-4.32	1.376	-4.32
08	-1.094	1.27	-4.32	-2.391
09	1.376	-4.32	-4.32	-4.32
10	1.376	-4.32	-4.32	-4.32
11	-4.32	-0.022	-0.518	0.881
12	0.388	0.282	-0.308	-0.765