We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorCLOCK
(GeneCards)
ModelCLOCK_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
C
Motif rank
0
ConsensusSdvnCAMRYGvvvh
Best auROC (human)0.658
Best auROC (mouse)0.735
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)22
Aligned words253
TF familyPAS domain factors {1.2.5}
TF subfamilyArnt-like factors {1.2.5.2}
HGNCHGNC:2082
EntrezGeneGeneID:9575
(SSTAR profile)
UniProt IDCLOCK_HUMAN
UniProt ACO15516
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.72441
0.0005 5.3209599999999995
0.0001 6.53251
GTEx tissue expression atlas CLOCK expression
ReMap ChIP-seq dataset list CLOCK datasets
Motifs in JASPAR
MA0819.1 (CLOCK; Homo sapiens)
PCM
ACGT
0140.0151.045.016.0
02107.029.048.068.0
0351.037.0129.035.0
0485.081.042.044.0
0524.0214.011.03.0
06204.016.011.021.0
0739.0153.032.028.0
0864.014.0162.012.0
0924.030.011.0187.0
1022.06.0217.07.0
11101.079.045.027.0
1293.061.071.027.0
1356.098.073.025.0
14124.075.06.047.0
PWM
ACGT
01-0.4420.862-0.328-1.309
020.521-0.751-0.2650.075
03-0.206-0.5170.706-0.571
040.2940.247-0.395-0.35
05-0.9311.208-1.649-2.687
061.16-1.309-1.649-1.057
07-0.4660.875-0.657-0.784
080.015-1.4320.931-1.571
09-0.931-0.719-1.6491.074
10-1.013-2.1661.221-2.039
110.4640.222-0.328-0.819
120.383-0.0320.117-0.819
13-0.1150.4340.144-0.892
140.6670.171-2.166-0.286