Model info
| Transcription factor | EBF1 (GeneCards) | ||||||||
| Model | COE1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdbYCCCMWGGGRvh | ||||||||
| Best auROC (human) | 0.994 | ||||||||
| Best auROC (mouse) | 0.992 | ||||||||
| Peak sets in benchmark (human) | 17 | ||||||||
| Peak sets in benchmark (mouse) | 55 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Early B-Cell Factor-related factors {6.1.5} | ||||||||
| TF subfamily | EBF1 (COE1) {6.1.5.0.1} | ||||||||
| HGNC | HGNC:3126 | ||||||||
| EntrezGene | GeneID:1879 (SSTAR profile) | ||||||||
| UniProt ID | COE1_HUMAN | ||||||||
| UniProt AC | Q9UH73 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | EBF1 expression | ||||||||
| ReMap ChIP-seq dataset list | EBF1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 209.0 | 101.0 | 100.0 | 90.0 |
| 02 | 210.0 | 45.0 | 136.0 | 109.0 |
| 03 | 59.0 | 128.0 | 207.0 | 106.0 |
| 04 | 29.0 | 101.0 | 12.0 | 358.0 |
| 05 | 1.0 | 495.0 | 1.0 | 3.0 |
| 06 | 7.0 | 407.0 | 0.0 | 86.0 |
| 07 | 3.0 | 473.0 | 1.0 | 23.0 |
| 08 | 125.0 | 312.0 | 20.0 | 43.0 |
| 09 | 337.0 | 7.0 | 6.0 | 150.0 |
| 10 | 9.0 | 0.0 | 491.0 | 0.0 |
| 11 | 124.0 | 1.0 | 362.0 | 13.0 |
| 12 | 3.0 | 2.0 | 495.0 | 0.0 |
| 13 | 329.0 | 23.0 | 128.0 | 20.0 |
| 14 | 110.0 | 217.0 | 127.0 | 46.0 |
| 15 | 106.0 | 176.0 | 46.0 | 172.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.509 | -0.21 | -0.22 | -0.324 |
| 02 | 0.514 | -1.0 | 0.083 | -0.135 |
| 03 | -0.737 | 0.023 | 0.5 | -0.163 |
| 04 | -1.421 | -0.21 | -2.234 | 1.044 |
| 05 | -3.903 | 1.367 | -3.903 | -3.325 |
| 06 | -2.694 | 1.172 | -4.4 | -0.368 |
| 07 | -3.325 | 1.322 | -3.903 | -1.64 |
| 08 | 0.0 | 0.907 | -1.77 | -1.044 |
| 09 | 0.984 | -2.694 | -2.819 | 0.18 |
| 10 | -2.484 | -4.4 | 1.359 | -4.4 |
| 11 | -0.008 | -3.903 | 1.055 | -2.163 |
| 12 | -3.325 | -3.573 | 1.367 | -4.4 |
| 13 | 0.96 | -1.64 | 0.023 | -1.77 |
| 14 | -0.126 | 0.546 | 0.016 | -0.979 |
| 15 | -0.163 | 0.339 | -0.979 | 0.316 |