We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorEBF1
(GeneCards)
ModelCOE1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusvdbYCCCMWGGGRvh
Best auROC (human)0.994
Best auROC (mouse)0.992
Peak sets in benchmark (human)17
Peak sets in benchmark (mouse)55
Aligned words500
TF familyEarly B-Cell Factor-related factors {6.1.5}
TF subfamilyEBF1 (COE1) {6.1.5.0.1}
HGNCHGNC:3126
EntrezGeneGeneID:1879
(SSTAR profile)
UniProt IDCOE1_HUMAN
UniProt ACQ9UH73
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.05181
0.0005 5.21446
0.0001 7.596660000000001
GTEx tissue expression atlas EBF1 expression
ReMap ChIP-seq dataset list EBF1 datasets
Motifs in JASPAR
PCM
ACGT
01209.0101.0100.090.0
02210.045.0136.0109.0
0359.0128.0207.0106.0
0429.0101.012.0358.0
051.0495.01.03.0
067.0407.00.086.0
073.0473.01.023.0
08125.0312.020.043.0
09337.07.06.0150.0
109.00.0491.00.0
11124.01.0362.013.0
123.02.0495.00.0
13329.023.0128.020.0
14110.0217.0127.046.0
15106.0176.046.0172.0
PWM
ACGT
010.509-0.21-0.22-0.324
020.514-1.00.083-0.135
03-0.7370.0230.5-0.163
04-1.421-0.21-2.2341.044
05-3.9031.367-3.903-3.325
06-2.6941.172-4.4-0.368
07-3.3251.322-3.903-1.64
080.00.907-1.77-1.044
090.984-2.694-2.8190.18
10-2.484-4.41.359-4.4
11-0.008-3.9031.055-2.163
12-3.325-3.5731.367-4.4
130.96-1.640.023-1.77
14-0.1260.5460.016-0.979
15-0.1630.339-0.9790.316