Model info
| Transcription factor | Ebf1 | ||||||||
| Model | COE1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dbYCCCWRGGGAv | ||||||||
| Best auROC (human) | 0.993 | ||||||||
| Best auROC (mouse) | 0.993 | ||||||||
| Peak sets in benchmark (human) | 17 | ||||||||
| Peak sets in benchmark (mouse) | 55 | ||||||||
| Aligned words | 429 | ||||||||
| TF family | Early B-Cell Factor-related factors {6.1.5} | ||||||||
| TF subfamily | EBF1 (COE1) {6.1.5.0.1} | ||||||||
| MGI | MGI:95275 | ||||||||
| EntrezGene | GeneID:13591 (SSTAR profile) | ||||||||
| UniProt ID | COE1_MOUSE | ||||||||
| UniProt AC | Q07802 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Ebf1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 179.0 | 41.0 | 129.0 | 80.0 |
| 02 | 52.0 | 81.0 | 205.0 | 91.0 |
| 03 | 11.0 | 144.0 | 24.0 | 250.0 |
| 04 | 1.0 | 424.0 | 3.0 | 1.0 |
| 05 | 2.0 | 341.0 | 2.0 | 84.0 |
| 06 | 2.0 | 419.0 | 2.0 | 6.0 |
| 07 | 173.0 | 18.0 | 35.0 | 203.0 |
| 08 | 81.0 | 16.0 | 290.0 | 42.0 |
| 09 | 5.0 | 5.0 | 415.0 | 4.0 |
| 10 | 48.0 | 0.0 | 381.0 | 0.0 |
| 11 | 0.0 | 0.0 | 429.0 | 0.0 |
| 12 | 364.0 | 8.0 | 52.0 | 5.0 |
| 13 | 85.0 | 186.0 | 129.0 | 29.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.507 | -0.939 | 0.182 | -0.288 |
| 02 | -0.709 | -0.276 | 0.641 | -0.162 |
| 03 | -2.162 | 0.291 | -1.45 | 0.838 |
| 04 | -3.767 | 1.364 | -3.182 | -3.767 |
| 05 | -3.432 | 1.147 | -3.432 | -0.24 |
| 06 | -3.432 | 1.352 | -3.432 | -2.672 |
| 07 | 0.473 | -1.718 | -1.091 | 0.631 |
| 08 | -0.276 | -1.826 | 0.986 | -0.916 |
| 09 | -2.815 | -2.815 | 1.343 | -2.982 |
| 10 | -0.787 | -4.274 | 1.258 | -4.274 |
| 11 | -4.274 | -4.274 | 1.376 | -4.274 |
| 12 | 1.212 | -2.436 | -0.709 | -2.815 |
| 13 | -0.229 | 0.545 | 0.182 | -1.271 |