We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR2F1
(GeneCards)
ModelCOT1_HUMAN.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
C
Motif rank
0
ConsensusvdRdbbRRAGGTCAvvv
Best auROC (human)0.868
Best auROC (mouse)
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)
Aligned words489
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyCOUP-like receptors (NR2F) {2.1.3.5}
HGNCHGNC:7975
EntrezGeneGeneID:7025
(SSTAR profile)
UniProt IDCOT1_HUMAN
UniProt ACP10589
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.116710000000001
0.0005 10.28486
0.0001 14.69166
GTEx tissue expression atlas NR2F1 expression
ReMap ChIP-seq dataset list NR2F1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0135.05.078.06.056.09.017.017.072.09.090.015.012.01.048.012.0
0232.06.0129.08.011.05.07.01.048.022.0152.011.07.04.032.07.0
0318.013.055.012.010.08.011.08.045.030.0207.038.00.09.014.04.0
0410.015.032.016.013.014.010.023.018.042.094.0133.04.016.028.014.0
0510.010.022.03.030.033.03.021.022.078.036.028.07.0110.047.022.0
0637.010.017.05.0168.021.023.019.055.019.024.010.028.010.029.07.0
07100.011.0172.05.032.00.023.05.035.03.051.04.013.00.028.00.0
08139.00.041.00.012.00.01.01.0173.02.099.00.010.00.04.00.0
095.00.0324.05.00.00.02.00.01.00.0143.01.00.00.01.00.0
100.00.06.00.00.00.00.00.03.02.0461.04.00.00.06.00.0
110.00.02.01.00.00.00.02.00.026.086.0361.00.00.00.04.0
120.00.00.00.01.024.01.00.03.084.01.00.03.0347.011.07.0
137.00.00.00.0438.02.011.04.013.00.00.00.07.00.00.00.0
1478.095.0250.042.00.00.01.01.04.06.00.01.00.01.03.00.0
1531.07.040.04.038.020.028.016.092.066.081.015.07.08.024.05.0
1624.025.096.023.039.028.020.014.032.033.081.027.04.05.023.08.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.148-1.7340.944-1.5640.614-1.179-0.562-0.5620.864-1.1791.086-0.685-0.902-3.0920.461-0.902
020.06-1.5641.445-1.292-0.986-1.734-1.418-3.0920.461-0.311.608-0.986-1.418-1.940.06-1.418
03-0.506-0.8240.596-0.902-1.078-1.292-0.986-1.2920.397-0.0041.9160.23-4.37-1.179-0.752-1.94
04-1.078-0.6850.06-0.622-0.824-0.752-1.078-0.266-0.5060.3291.1291.475-1.94-0.622-0.072-0.752
05-1.078-1.078-0.31-2.198-0.0040.09-2.198-0.355-0.310.9440.176-0.072-1.4181.2860.44-0.31
060.203-1.078-0.562-1.7341.708-0.355-0.266-0.4540.596-0.454-0.224-1.078-0.072-1.078-0.038-1.418
071.191-0.9861.732-1.7340.06-4.37-0.266-1.7340.148-2.1980.521-1.94-0.824-4.37-0.072-4.37
081.519-4.370.305-4.37-0.902-4.37-3.092-3.0921.737-2.5481.181-4.37-1.078-4.37-1.94-4.37
09-1.734-4.372.364-1.734-4.37-4.37-2.548-4.37-3.092-4.371.547-3.092-4.37-4.37-3.092-4.37
10-4.37-4.37-1.564-4.37-4.37-4.37-4.37-4.37-2.198-2.5482.716-1.94-4.37-4.37-1.564-4.37
11-4.37-4.37-2.548-3.092-4.37-4.37-4.37-2.548-4.37-0.1451.0412.472-4.37-4.37-4.37-1.94
12-4.37-4.37-4.37-4.37-3.092-0.224-3.092-4.37-2.1981.017-3.092-4.37-2.1982.432-0.986-1.418
13-1.418-4.37-4.37-4.372.665-2.548-0.986-1.94-0.824-4.37-4.37-4.37-1.418-4.37-4.37-4.37
140.9441.142.1050.329-4.37-4.37-3.092-3.092-1.94-1.564-4.37-3.092-4.37-3.092-2.198-4.37
150.028-1.4180.28-1.940.23-0.403-0.072-0.6221.1080.7770.981-0.685-1.418-1.292-0.224-1.734
16-0.224-0.1841.15-0.2660.255-0.072-0.403-0.7520.060.090.981-0.108-1.94-1.734-0.266-1.292