Model info
| Transcription factor | NR2F1 (GeneCards) | ||||||||
| Model | COT1_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vRRRbvRRAGGKCAdvv | ||||||||
| Best auROC (human) | 0.879 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 501 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | COUP-like receptors (NR2F) {2.1.3.5} | ||||||||
| HGNC | HGNC:7975 | ||||||||
| EntrezGene | GeneID:7025 (SSTAR profile) | ||||||||
| UniProt ID | COT1_HUMAN | ||||||||
| UniProt AC | P10589 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NR2F1 expression | ||||||||
| ReMap ChIP-seq dataset list | NR2F1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 90.0 | 73.0 | 270.0 | 67.0 |
| 02 | 144.0 | 37.0 | 275.0 | 44.0 |
| 03 | 124.0 | 39.0 | 296.0 | 41.0 |
| 04 | 104.0 | 59.0 | 295.0 | 42.0 |
| 05 | 43.0 | 75.0 | 181.0 | 201.0 |
| 06 | 66.0 | 238.0 | 145.0 | 51.0 |
| 07 | 316.0 | 56.0 | 97.0 | 31.0 |
| 08 | 206.0 | 24.0 | 262.0 | 8.0 |
| 09 | 363.0 | 0.0 | 135.0 | 2.0 |
| 10 | 9.0 | 0.0 | 456.0 | 35.0 |
| 11 | 8.0 | 5.0 | 481.0 | 6.0 |
| 12 | 5.0 | 39.0 | 140.0 | 316.0 |
| 13 | 33.0 | 432.0 | 21.0 | 14.0 |
| 14 | 480.0 | 2.0 | 8.0 | 10.0 |
| 15 | 102.0 | 63.0 | 259.0 | 76.0 |
| 16 | 113.0 | 92.0 | 247.0 | 48.0 |
| 17 | 93.0 | 84.0 | 253.0 | 70.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.324 | -0.529 | 0.763 | -0.613 |
| 02 | 0.14 | -1.189 | 0.782 | -1.022 |
| 03 | -0.008 | -1.138 | 0.855 | -1.09 |
| 04 | -0.181 | -0.737 | 0.852 | -1.067 |
| 05 | -1.044 | -0.503 | 0.366 | 0.47 |
| 06 | -0.628 | 0.638 | 0.147 | -0.879 |
| 07 | 0.92 | -0.788 | -0.25 | -1.358 |
| 08 | 0.495 | -1.6 | 0.734 | -2.584 |
| 09 | 1.058 | -4.4 | 0.076 | -3.573 |
| 10 | -2.484 | -4.4 | 1.285 | -1.242 |
| 11 | -2.584 | -2.961 | 1.338 | -2.819 |
| 12 | -2.961 | -1.138 | 0.112 | 0.92 |
| 13 | -1.298 | 1.231 | -1.725 | -2.096 |
| 14 | 1.336 | -3.573 | -2.584 | -2.394 |
| 15 | -0.201 | -0.673 | 0.722 | -0.49 |
| 16 | -0.1 | -0.302 | 0.675 | -0.938 |
| 17 | -0.291 | -0.392 | 0.699 | -0.57 |