We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR2F1
(GeneCards)
ModelCOT1_HUMAN.H11MO.1.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
1
ConsensusbvdRAGGKCAvvR
Best auROC (human)0.851
Best auROC (mouse)
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)
Aligned words478
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyCOUP-like receptors (NR2F) {2.1.3.5}
HGNCHGNC:7975
EntrezGeneGeneID:7025
(SSTAR profile)
UniProt IDCOT1_HUMAN
UniProt ACP10589
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.68411
0.0005 5.66151
0.0001 7.5910150000000005
GTEx tissue expression atlas NR2F1 expression
ReMap ChIP-seq dataset list NR2F1 datasets
Motifs in JASPAR
PCM
ACGT
0140.093.0183.0162.0
0260.0240.0136.042.0
03283.052.080.063.0
04176.016.0283.03.0
05344.00.0133.01.0
064.01.0455.018.0
073.00.0462.013.0
084.033.0104.0337.0
0916.0437.013.012.0
10474.01.03.00.0
11107.074.0251.046.0
12150.070.0218.040.0
1370.046.0304.058.0
PWM
ACGT
01-1.069-0.2470.4220.301
02-0.6760.6910.128-1.022
030.855-0.816-0.395-0.629
040.383-1.9320.855-3.283
051.049-4.3630.106-3.863
06-3.084-3.8631.328-1.824
07-3.283-4.3631.343-2.119
08-3.084-1.254-0.1371.029
09-1.9321.287-2.119-2.19
101.368-3.863-3.283-4.363
11-0.109-0.4710.735-0.935
120.225-0.5260.595-1.069
13-0.526-0.9350.926-0.709