We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNr2f1
ModelCOT1_MOUSE.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length9
Quality
B
Motif rank
0
ConsensusYWRAGGTCA
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words86
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyCOUP-like receptors (NR2F) {2.1.3.5}
MGIMGI:1352451
EntrezGeneGeneID:13865
(SSTAR profile)
UniProt IDCOT1_MOUSE
UniProt ACQ60632
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.3797
0.0005 6.2498000000000005
0.0001 7.770300000000001
GTEx tissue expression atlas Nr2f1 expression
Motifs in JASPAR
PCM
ACGT
018.07352.9717.15614.966
0257.0438.978.0949.058
0354.6194.17217.6156.759
0466.840.016.3260.0
050.7510.082.4150.0
060.00.063.32319.843
070.7517.1392.33672.939
080.83475.610.7515.97
0970.627.083.7761.69
PWM
ACGT
01-0.8690.904-0.975-0.309
020.977-0.776-0.867-0.768
030.934-1.423-0.157-1.024
041.132-2.986-0.228-2.986
05-2.468-2.9861.339-2.986
06-2.986-2.9861.079-0.044
07-2.468-0.977-1.851.218
08-2.4241.254-2.468-1.13
091.187-0.984-1.501-2.058