We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR2F2
(GeneCards)
ModelCOT2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv10
Model length13
Quality
A
Motif rank
0
ConsensusvMRAGGTCAdvdd
Best auROC (human)0.934
Best auROC (mouse)0.833
Peak sets in benchmark (human)28
Peak sets in benchmark (mouse)3
Aligned words509
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyCOUP-like receptors (NR2F) {2.1.3.5}
HGNCHGNC:7976
EntrezGeneGeneID:7026
(SSTAR profile)
UniProt IDCOT2_HUMAN
UniProt ACP24468
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.10141
0.0005 6.04226
0.0001 7.900925
GTEx tissue expression atlas NR2F2 expression
ReMap ChIP-seq dataset list NR2F2 datasets
Motifs in JASPAR
MA1111.1 (NR2F2; Homo sapiens)
PCM
ACGT
0194.404235.18392.71777.697
02333.39874.6142.5349.462
03265.637.139171.97125.29
04366.4271.046129.5842.943
053.7550.0490.65.645
0617.7373.713451.87226.678
073.75525.05940.867430.319
080.91462.910.86625.325
09494.2280.03.9711.801
10186.79360.47188.79163.946
11204.46958.312191.67345.545
12106.41128.736282.43282.421
13116.28663.682189.97130.062
PWM
ACGT
01-0.2770.626-0.294-0.468
020.973-0.508-1.055-0.909
030.747-1.1850.316-1.551
041.067-3.8850.036-3.337
05-3.171-4.41.358-2.867
06-1.881-3.1791.276-1.5
07-3.171-1.559-1.0931.227
08-3.9391.3-2.321-1.549
091.365-4.4-3.131-3.63
100.398-0.7130.408-0.659
110.487-0.7490.423-0.988
12-0.159-1.430.808-0.41
13-0.071-0.6630.4140.039