We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR2F2
(GeneCards)
ModelCOT2_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
1
ConsensusdRdvbhWRAGGKCAvvv
Best auROC (human)0.915
Best auROC (mouse)0.732
Peak sets in benchmark (human)28
Peak sets in benchmark (mouse)3
Aligned words503
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyCOUP-like receptors (NR2F) {2.1.3.5}
HGNCHGNC:7976
EntrezGeneGeneID:7026
(SSTAR profile)
UniProt IDCOT2_HUMAN
UniProt ACP24468
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.00681
0.0005 5.86721
0.0001 7.625910000000001
GTEx tissue expression atlas NR2F2 expression
ReMap ChIP-seq dataset list NR2F2 datasets
Motifs in JASPAR
PCM
ACGT
01158.043.0215.084.0
02132.023.0282.063.0
03135.051.0254.060.0
0491.092.0256.061.0
0564.0132.0100.0204.0
0699.0272.062.067.0
07319.038.059.084.0
08249.012.0229.010.0
09366.01.0129.04.0
1013.02.0450.035.0
1114.05.0455.026.0
126.024.092.0378.0
1335.0416.024.025.0
14479.07.08.06.0
15113.090.0208.089.0
16151.098.0187.064.0
17130.077.0232.061.0
PWM
ACGT
010.232-1.0440.537-0.392
020.054-1.640.807-0.673
030.076-0.8790.703-0.721
04-0.313-0.3020.711-0.705
05-0.6580.054-0.220.485
06-0.230.771-0.689-0.613
070.929-1.163-0.737-0.392
080.683-2.2340.6-2.394
091.066-3.9030.031-3.126
10-2.163-3.5731.272-1.242
11-2.096-2.9611.283-1.525
12-2.819-1.6-0.3021.098
13-1.2421.194-1.6-1.561
141.334-2.694-2.584-2.819
15-0.1-0.3240.504-0.335
160.187-0.240.399-0.658
170.039-0.4770.613-0.705