Model info
| Transcription factor | Nr2f2 | ||||||||
| Model | COT2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nhhRAGGTCAvvd | ||||||||
| Best auROC (human) | 0.931 | ||||||||
| Best auROC (mouse) | 0.846 | ||||||||
| Peak sets in benchmark (human) | 28 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | COUP-like receptors (NR2F) {2.1.3.5} | ||||||||
| MGI | MGI:1352452 | ||||||||
| EntrezGene | GeneID:11819 (SSTAR profile) | ||||||||
| UniProt ID | COT2_MOUSE | ||||||||
| UniProt AC | P43135 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nr2f2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 86.0 | 174.0 | 126.0 | 114.0 |
| 02 | 136.0 | 212.0 | 72.0 | 80.0 |
| 03 | 274.0 | 95.0 | 55.0 | 76.0 |
| 04 | 240.0 | 41.0 | 188.0 | 31.0 |
| 05 | 382.0 | 2.0 | 111.0 | 5.0 |
| 06 | 17.0 | 0.0 | 478.0 | 5.0 |
| 07 | 8.0 | 3.0 | 477.0 | 12.0 |
| 08 | 9.0 | 31.0 | 44.0 | 416.0 |
| 09 | 2.0 | 454.0 | 20.0 | 24.0 |
| 10 | 486.0 | 1.0 | 5.0 | 8.0 |
| 11 | 164.0 | 78.0 | 188.0 | 70.0 |
| 12 | 207.0 | 73.0 | 176.0 | 44.0 |
| 13 | 142.0 | 54.0 | 203.0 | 101.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.368 | 0.327 | 0.008 | -0.091 |
| 02 | 0.083 | 0.523 | -0.543 | -0.439 |
| 03 | 0.778 | -0.271 | -0.805 | -0.49 |
| 04 | 0.646 | -1.09 | 0.404 | -1.358 |
| 05 | 1.109 | -3.573 | -0.117 | -2.961 |
| 06 | -1.92 | -4.4 | 1.332 | -2.961 |
| 07 | -2.584 | -3.325 | 1.33 | -2.234 |
| 08 | -2.484 | -1.358 | -1.022 | 1.194 |
| 09 | -3.573 | 1.281 | -1.77 | -1.6 |
| 10 | 1.349 | -3.903 | -2.961 | -2.584 |
| 11 | 0.269 | -0.464 | 0.404 | -0.57 |
| 12 | 0.5 | -0.529 | 0.339 | -1.022 |
| 13 | 0.126 | -0.823 | 0.48 | -0.21 |