Model info
| Transcription factor | Nr2f2 | ||||||||
| Model | COT2_MOUSE.H11MO.1.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 15 | ||||||||
| Quality | B | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vRGKbCAdRGRKYvv | ||||||||
| Best auROC (human) | 0.9 | ||||||||
| Best auROC (mouse) | 0.758 | ||||||||
| Peak sets in benchmark (human) | 28 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 82 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | COUP-like receptors (NR2F) {2.1.3.5} | ||||||||
| MGI | MGI:1352452 | ||||||||
| EntrezGene | GeneID:11819 (SSTAR profile) | ||||||||
| UniProt ID | COT2_MOUSE | ||||||||
| UniProt AC | P43135 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nr2f2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 32.017 | 16.88 | 23.106 | 6.94 |
| 02 | 43.87 | 0.914 | 20.907 | 13.252 |
| 03 | 7.197 | 2.171 | 62.606 | 6.969 |
| 04 | 5.027 | 1.028 | 56.037 | 16.851 |
| 05 | 7.426 | 9.825 | 16.451 | 45.241 |
| 06 | 0.0 | 72.203 | 4.57 | 2.171 |
| 07 | 71.746 | 4.113 | 0.0 | 3.085 |
| 08 | 42.956 | 7.426 | 20.564 | 7.997 |
| 09 | 43.242 | 3.085 | 21.992 | 10.625 |
| 10 | 14.395 | 0.0 | 59.293 | 5.255 |
| 11 | 11.539 | 5.37 | 51.753 | 10.282 |
| 12 | 7.226 | 8.768 | 16.708 | 46.241 |
| 13 | 5.141 | 48.669 | 9.368 | 15.766 |
| 14 | 45.812 | 10.511 | 15.766 | 6.855 |
| 15 | 33.474 | 18.736 | 14.852 | 11.882 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.464 | -0.147 | 0.15 | -0.953 |
| 02 | 0.77 | -2.34 | 0.055 | -0.373 |
| 03 | -0.921 | -1.854 | 1.118 | -0.949 |
| 04 | -1.225 | -2.285 | 1.009 | -0.149 |
| 05 | -0.894 | -0.646 | -0.172 | 0.8 |
| 06 | -2.948 | 1.258 | -1.303 | -1.854 |
| 07 | 1.252 | -1.387 | -2.948 | -1.607 |
| 08 | 0.749 | -0.894 | 0.039 | -0.829 |
| 09 | 0.755 | -1.607 | 0.103 | -0.575 |
| 10 | -0.296 | -2.948 | 1.064 | -1.188 |
| 11 | -0.5 | -1.17 | 0.931 | -0.605 |
| 12 | -0.918 | -0.748 | -0.157 | 0.821 |
| 13 | -1.206 | 0.871 | -0.689 | -0.211 |
| 14 | 0.812 | -0.585 | -0.211 | -0.964 |
| 15 | 0.507 | -0.049 | -0.267 | -0.473 |