Model info
| Transcription factor | Nr2f2 | ||||||||
| Model | COT2_MOUSE.H11MO.2.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | B | ||||||||
| Motif rank | 2 | ||||||||
| Consensus | dRdvbhWRAGGKCAvvv | ||||||||
| Best auROC (human) | 0.915 | ||||||||
| Best auROC (mouse) | 0.732 | ||||||||
| Peak sets in benchmark (human) | 28 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 503 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | COUP-like receptors (NR2F) {2.1.3.5} | ||||||||
| MGI | MGI:1352452 | ||||||||
| EntrezGene | GeneID:11819 (SSTAR profile) | ||||||||
| UniProt ID | COT2_MOUSE | ||||||||
| UniProt AC | P43135 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nr2f2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 158.0 | 43.0 | 215.0 | 84.0 |
| 02 | 132.0 | 23.0 | 282.0 | 63.0 |
| 03 | 135.0 | 51.0 | 254.0 | 60.0 |
| 04 | 91.0 | 92.0 | 256.0 | 61.0 |
| 05 | 64.0 | 132.0 | 100.0 | 204.0 |
| 06 | 99.0 | 272.0 | 62.0 | 67.0 |
| 07 | 319.0 | 38.0 | 59.0 | 84.0 |
| 08 | 249.0 | 12.0 | 229.0 | 10.0 |
| 09 | 366.0 | 1.0 | 129.0 | 4.0 |
| 10 | 13.0 | 2.0 | 450.0 | 35.0 |
| 11 | 14.0 | 5.0 | 455.0 | 26.0 |
| 12 | 6.0 | 24.0 | 92.0 | 378.0 |
| 13 | 35.0 | 416.0 | 24.0 | 25.0 |
| 14 | 479.0 | 7.0 | 8.0 | 6.0 |
| 15 | 113.0 | 90.0 | 208.0 | 89.0 |
| 16 | 151.0 | 98.0 | 187.0 | 64.0 |
| 17 | 130.0 | 77.0 | 232.0 | 61.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.232 | -1.044 | 0.537 | -0.392 |
| 02 | 0.054 | -1.64 | 0.807 | -0.673 |
| 03 | 0.076 | -0.879 | 0.703 | -0.721 |
| 04 | -0.313 | -0.302 | 0.711 | -0.705 |
| 05 | -0.658 | 0.054 | -0.22 | 0.485 |
| 06 | -0.23 | 0.771 | -0.689 | -0.613 |
| 07 | 0.929 | -1.163 | -0.737 | -0.392 |
| 08 | 0.683 | -2.234 | 0.6 | -2.394 |
| 09 | 1.066 | -3.903 | 0.031 | -3.126 |
| 10 | -2.163 | -3.573 | 1.272 | -1.242 |
| 11 | -2.096 | -2.961 | 1.283 | -1.525 |
| 12 | -2.819 | -1.6 | -0.302 | 1.098 |
| 13 | -1.242 | 1.194 | -1.6 | -1.561 |
| 14 | 1.334 | -2.694 | -2.584 | -2.819 |
| 15 | -0.1 | -0.324 | 0.504 | -0.335 |
| 16 | 0.187 | -0.24 | 0.399 | -0.658 |
| 17 | 0.039 | -0.477 | 0.613 | -0.705 |