Model info
| Transcription factor | CRX (GeneCards) | ||||||||
| Model | CRX_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hvRdvGGATTAdv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.933 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | OTX {3.1.3.17} | ||||||||
| HGNC | HGNC:2383 | ||||||||
| EntrezGene | GeneID:1406 (SSTAR profile) | ||||||||
| UniProt ID | CRX_HUMAN | ||||||||
| UniProt AC | O43186 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | CRX expression | ||||||||
| ReMap ChIP-seq dataset list | CRX datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 124.0 | 82.0 | 76.0 | 218.0 |
| 02 | 267.0 | 52.0 | 131.0 | 50.0 |
| 03 | 287.0 | 23.0 | 138.0 | 52.0 |
| 04 | 86.0 | 46.0 | 283.0 | 85.0 |
| 05 | 249.0 | 82.0 | 131.0 | 38.0 |
| 06 | 96.0 | 3.0 | 388.0 | 13.0 |
| 07 | 16.0 | 5.0 | 468.0 | 11.0 |
| 08 | 382.0 | 109.0 | 8.0 | 1.0 |
| 09 | 0.0 | 0.0 | 0.0 | 500.0 |
| 10 | 11.0 | 29.0 | 12.0 | 448.0 |
| 11 | 440.0 | 2.0 | 17.0 | 41.0 |
| 12 | 135.0 | 33.0 | 263.0 | 69.0 |
| 13 | 117.0 | 162.0 | 172.0 | 49.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.008 | -0.415 | -0.49 | 0.551 |
| 02 | 0.752 | -0.86 | 0.046 | -0.898 |
| 03 | 0.824 | -1.64 | 0.098 | -0.86 |
| 04 | -0.368 | -0.979 | 0.81 | -0.38 |
| 05 | 0.683 | -0.415 | 0.046 | -1.163 |
| 06 | -0.26 | -3.325 | 1.124 | -2.163 |
| 07 | -1.975 | -2.961 | 1.311 | -2.311 |
| 08 | 1.109 | -0.135 | -2.584 | -3.903 |
| 09 | -4.4 | -4.4 | -4.4 | 1.377 |
| 10 | -2.311 | -1.421 | -2.234 | 1.268 |
| 11 | 1.25 | -3.573 | -1.92 | -1.09 |
| 12 | 0.076 | -1.298 | 0.737 | -0.584 |
| 13 | -0.065 | 0.256 | 0.316 | -0.918 |