We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorCTCFL
(GeneCards)
ModelCTCFL_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusvSCdShAGGKGGCGShnn
Best auROC (human)0.98
Best auROC (mouse)0.995
Peak sets in benchmark (human)25
Peak sets in benchmark (mouse)8
Aligned words490
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyCTCF-like factors {2.3.3.50}
HGNCHGNC:16234
EntrezGeneGeneID:140690
(SSTAR profile)
UniProt IDCTCFL_HUMAN
UniProt ACQ8NI51
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.2046099999999997
0.0005 4.573309999999999
0.0001 9.62221
GTEx tissue expression atlas CTCFL expression
ReMap ChIP-seq dataset list CTCFL datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
019.068.011.06.04.066.015.06.015.0167.017.010.01.079.010.01.0
022.026.00.01.09.0366.02.03.02.041.07.03.01.021.01.00.0
035.00.08.01.0176.039.0140.099.03.03.04.00.00.03.03.01.0
0413.090.080.01.08.019.016.02.017.097.039.02.06.031.064.00.0
055.024.08.07.034.0107.013.083.027.0117.08.047.01.01.03.00.0
0649.06.07.05.0235.03.00.011.020.07.01.04.0122.02.08.05.0
073.00.0421.02.00.00.018.00.00.02.014.00.00.00.025.00.0
080.00.03.00.00.01.00.01.0103.03.0369.03.01.00.01.00.0
091.04.096.03.01.02.01.00.033.024.0272.044.00.01.03.00.0
101.01.033.00.02.00.029.00.02.03.0365.02.00.00.047.00.0
110.00.05.00.00.01.01.02.03.06.0447.018.00.00.02.00.0
120.03.00.00.00.07.00.00.042.0398.04.011.01.018.00.01.0
132.01.040.00.0109.02.0308.07.00.00.04.00.01.01.010.00.0
141.022.086.03.03.01.00.00.017.0301.027.017.01.06.00.00.0
150.010.03.09.024.0126.026.0154.021.048.07.037.04.07.03.06.0
164.017.019.09.091.056.025.019.02.021.014.02.037.040.0120.09.0
1721.041.055.017.016.016.040.062.020.074.031.053.03.010.016.010.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.1850.801-0.992-1.57-1.9460.771-0.691-1.57-0.6911.696-0.569-1.084-3.0970.95-1.084-3.097
02-2.554-0.151-4.375-3.097-1.1852.479-2.554-2.204-2.5540.299-1.425-2.204-3.097-0.361-3.097-4.375
03-1.74-4.375-1.298-3.0971.7480.2491.521.175-2.204-2.204-1.946-4.375-4.375-2.204-2.204-3.097
04-0.831.080.963-3.097-1.298-0.46-0.628-2.554-0.5691.1540.249-2.554-1.570.0220.741-4.375
05-1.74-0.23-1.298-1.4250.1131.252-0.830.999-0.1141.341-1.2980.434-3.097-3.097-2.204-4.375
060.475-1.57-1.425-1.742.037-2.204-4.375-0.992-0.409-1.425-3.097-1.9461.383-2.554-1.298-1.74
07-2.204-4.3752.619-2.554-4.375-4.375-0.513-4.375-4.375-2.554-0.758-4.375-4.375-4.375-0.19-4.375
08-4.375-4.375-2.204-4.375-4.375-3.097-4.375-3.0971.214-2.2042.488-2.204-3.097-4.375-3.097-4.375
09-3.097-1.9461.144-2.204-3.097-2.554-3.097-4.3750.084-0.232.1830.369-4.375-3.097-2.204-4.375
10-3.097-3.0970.084-4.375-2.554-4.375-0.044-4.375-2.554-2.2042.477-2.554-4.375-4.3750.434-4.375
11-4.375-4.375-1.74-4.375-4.375-3.097-3.097-2.554-2.204-1.572.679-0.513-4.375-4.375-2.554-4.375
12-4.375-2.204-4.375-4.375-4.375-1.425-4.375-4.3750.3232.563-1.946-0.992-3.097-0.513-4.375-3.097
13-2.554-3.0970.274-4.3751.271-2.5542.307-1.425-4.375-4.375-1.946-4.375-3.097-3.097-1.084-4.375
14-3.097-0.3161.035-2.204-2.204-3.097-4.375-4.375-0.5692.284-0.114-0.569-3.097-1.57-4.375-4.375
15-4.375-1.084-2.204-1.185-0.231.415-0.1511.615-0.3610.455-1.4250.197-1.946-1.425-2.204-1.57
16-1.946-0.569-0.46-1.1851.0910.608-0.19-0.46-2.554-0.361-0.758-2.5540.1970.2741.366-1.185
17-0.3610.2990.59-0.569-0.628-0.6280.2740.709-0.4090.8850.0220.553-2.204-1.084-0.628-1.084