We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorCTCF
(GeneCards)
ModelCTCF_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length23
Quality
A
Motif rank
0
ConsensusnbbRCCRShAGGKGGCRSbvbnv
Best auROC (human)0.999
Best auROC (mouse)0.999
Peak sets in benchmark (human)502
Peak sets in benchmark (mouse)263
Aligned words502
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyCTCF-like factors {2.3.3.50}
HGNCHGNC:13723
EntrezGeneGeneID:10664
(SSTAR profile)
UniProt IDCTCF_HUMAN
UniProt ACP49711
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 -0.019989999999999997
0.0005 2.59441
0.0001 8.19436
GTEx tissue expression atlas CTCF expression
ReMap ChIP-seq dataset list CTCF datasets
Motifs in JASPAR
MA0139.1 (CTCF; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
011.027.015.045.017.045.014.071.018.073.011.061.03.046.016.037.0
027.03.026.03.044.035.055.057.013.010.027.06.09.029.0158.018.0
0318.03.045.07.028.01.031.017.047.021.0168.030.010.05.061.08.0
046.091.04.02.03.026.00.01.026.0246.09.024.02.058.01.01.0
051.036.00.00.05.0412.03.01.00.014.00.00.00.028.00.00.0
060.00.06.00.0366.06.081.037.00.01.02.00.00.00.01.00.0
073.0207.0152.04.01.05.01.00.02.052.034.02.00.018.019.00.0
080.03.01.02.052.0115.019.096.013.0153.016.024.01.00.02.03.0
0936.017.011.02.0266.00.04.01.029.03.03.03.0112.01.010.02.0
102.02.0438.01.02.00.019.00.01.01.025.01.00.00.08.00.0
111.00.04.00.00.00.03.00.0169.01.0316.04.00.00.02.00.0
120.04.0123.043.00.00.00.01.018.013.0139.0155.01.00.02.01.0
131.00.018.00.00.00.016.01.00.01.0262.01.01.00.0199.00.0
140.00.02.00.00.00.00.01.025.011.0436.023.00.00.02.00.0
150.021.00.04.00.09.01.01.031.0377.06.026.00.023.00.01.0
167.00.024.00.0199.06.0222.03.01.00.06.00.03.00.029.00.0
174.047.0156.03.03.00.00.03.021.0213.034.013.00.03.00.00.0
182.015.02.09.033.093.018.0119.010.0101.022.057.02.07.010.00.0
1914.014.015.04.0136.043.027.010.010.028.011.03.027.034.0122.02.0
2019.028.0100.040.025.020.041.033.013.063.028.071.01.03.011.04.0
2119.013.016.010.036.024.028.026.071.050.024.035.014.035.060.039.0
2213.016.0106.05.034.024.046.018.021.035.057.015.03.022.073.012.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-3.126-0.144-0.7210.361-0.5990.361-0.7880.814-0.5430.841-1.0220.663-2.2340.383-0.6580.167
02-1.454-2.234-0.181-2.2340.3390.1120.560.595-0.86-1.114-0.144-1.6-1.215-0.0741.611-0.543
03-0.543-2.2340.361-1.454-0.108-3.126-0.008-0.5990.404-0.3921.672-0.04-1.114-1.770.663-1.328
04-1.61.061-1.975-2.584-2.234-0.181-4.4-3.126-0.1812.053-1.215-0.26-2.5840.613-3.126-3.126
05-3.1260.14-4.4-4.4-1.772.568-2.234-3.126-4.4-0.788-4.4-4.4-4.4-0.108-4.4-4.4
06-4.4-4.4-1.6-4.42.449-1.60.9450.167-4.4-3.126-2.584-4.4-4.4-4.4-3.126-4.4
07-2.2341.881.572-1.975-3.126-1.77-3.126-4.4-2.5840.5040.083-2.584-4.4-0.543-0.49-4.4
08-4.4-2.234-3.126-2.5840.5041.294-0.491.114-0.861.579-0.658-0.26-3.126-4.4-2.584-2.234
090.14-0.599-1.022-2.5842.131-4.4-1.975-3.126-0.074-2.234-2.234-2.2341.268-3.126-1.114-2.584
10-2.584-2.5842.629-3.126-2.584-4.4-0.49-4.4-3.126-3.126-0.22-3.126-4.4-4.4-1.328-4.4
11-3.126-4.4-1.975-4.4-4.4-4.4-2.234-4.41.678-3.1262.303-1.975-4.4-4.4-2.584-4.4
12-4.4-1.9751.3610.316-4.4-4.4-4.4-3.126-0.543-0.861.4831.592-3.126-4.4-2.584-3.126
13-3.126-4.4-0.543-4.4-4.4-4.4-0.658-3.126-4.4-3.1262.115-3.126-3.126-4.41.841-4.4
14-4.4-4.4-2.584-4.4-4.4-4.4-4.4-3.126-0.22-1.0222.624-0.302-4.4-4.4-2.584-4.4
15-4.4-0.392-4.4-1.975-4.4-1.215-3.126-3.126-0.0082.479-1.6-0.181-4.4-0.302-4.4-3.126
16-1.454-4.4-0.26-4.41.841-1.61.95-2.234-3.126-4.4-1.6-4.4-2.234-4.4-0.074-4.4
17-1.9750.4041.598-2.234-2.234-4.4-4.4-2.234-0.3921.9090.083-0.86-4.4-2.234-4.4-4.4
18-2.584-0.721-2.584-1.2150.0541.082-0.5431.328-1.1141.165-0.3460.595-2.584-1.454-1.114-4.4
19-0.788-0.788-0.721-1.9751.4610.316-0.144-1.114-1.114-0.108-1.022-2.234-0.1440.0831.353-2.584
20-0.49-0.1081.1550.244-0.22-0.4390.2690.054-0.860.695-0.1080.814-3.126-2.234-1.022-1.975
21-0.49-0.86-0.658-1.1140.14-0.26-0.108-0.1810.8140.465-0.260.112-0.7880.1120.6460.219
22-0.86-0.6581.213-1.770.083-0.260.383-0.543-0.3920.1120.595-0.721-2.234-0.3460.841-0.938