Model info
| Transcription factor | CTCF (GeneCards) | ||||||||
| Model | CTCF_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 19 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbdCCRSYAGGKGGCRSbv | ||||||||
| Best auROC (human) | 0.997 | ||||||||
| Best auROC (mouse) | 0.998 | ||||||||
| Peak sets in benchmark (human) | 502 | ||||||||
| Peak sets in benchmark (mouse) | 263 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | CTCF-like factors {2.3.3.50} | ||||||||
| HGNC | HGNC:13723 | ||||||||
| EntrezGene | GeneID:10664 (SSTAR profile) | ||||||||
| UniProt ID | CTCF_HUMAN | ||||||||
| UniProt AC | P49711 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | CTCF expression | ||||||||
| ReMap ChIP-seq dataset list | CTCF datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 47.0 | 180.0 | 63.0 | 210.0 |
| 02 | 76.0 | 84.0 | 261.0 | 79.0 |
| 03 | 129.0 | 42.0 | 277.0 | 52.0 |
| 04 | 34.0 | 428.0 | 18.0 | 20.0 |
| 05 | 1.0 | 498.0 | 1.0 | 0.0 |
| 06 | 350.0 | 3.0 | 121.0 | 26.0 |
| 07 | 8.0 | 326.0 | 161.0 | 5.0 |
| 08 | 49.0 | 297.0 | 37.0 | 117.0 |
| 09 | 453.0 | 9.0 | 27.0 | 11.0 |
| 10 | 1.0 | 1.0 | 496.0 | 2.0 |
| 11 | 193.0 | 0.0 | 306.0 | 1.0 |
| 12 | 13.0 | 13.0 | 294.0 | 180.0 |
| 13 | 6.0 | 1.0 | 492.0 | 1.0 |
| 14 | 25.0 | 13.0 | 430.0 | 32.0 |
| 15 | 34.0 | 438.0 | 6.0 | 22.0 |
| 16 | 198.0 | 7.0 | 292.0 | 3.0 |
| 17 | 38.0 | 281.0 | 163.0 | 18.0 |
| 18 | 48.0 | 211.0 | 58.0 | 183.0 |
| 19 | 186.0 | 134.0 | 158.0 | 22.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.958 | 0.361 | -0.673 | 0.514 |
| 02 | -0.49 | -0.392 | 0.73 | -0.452 |
| 03 | 0.031 | -1.067 | 0.789 | -0.86 |
| 04 | -1.27 | 1.222 | -1.868 | -1.77 |
| 05 | -3.903 | 1.373 | -3.903 | -4.4 |
| 06 | 1.022 | -3.325 | -0.032 | -1.525 |
| 07 | -2.584 | 0.951 | 0.25 | -2.961 |
| 08 | -0.918 | 0.858 | -1.189 | -0.065 |
| 09 | 1.279 | -2.484 | -1.489 | -2.311 |
| 10 | -3.903 | -3.903 | 1.369 | -3.573 |
| 11 | 0.43 | -4.4 | 0.888 | -3.903 |
| 12 | -2.163 | -2.163 | 0.848 | 0.361 |
| 13 | -2.819 | -3.903 | 1.361 | -3.903 |
| 14 | -1.561 | -2.163 | 1.227 | -1.328 |
| 15 | -1.27 | 1.245 | -2.819 | -1.681 |
| 16 | 0.455 | -2.694 | 0.841 | -3.325 |
| 17 | -1.163 | 0.803 | 0.263 | -1.868 |
| 18 | -0.938 | 0.519 | -0.754 | 0.377 |
| 19 | 0.393 | 0.069 | 0.232 | -1.681 |