We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorCTCF
(GeneCards)
ModelCTCF_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusbbdCCRSYAGGKGGCRSbv
Best auROC (human)0.997
Best auROC (mouse)0.998
Peak sets in benchmark (human)502
Peak sets in benchmark (mouse)263
Aligned words500
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyCTCF-like factors {2.3.3.50}
HGNCHGNC:13723
EntrezGeneGeneID:10664
(SSTAR profile)
UniProt IDCTCF_HUMAN
UniProt ACP49711
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 0.47931
0.0005 1.83026
0.0001 4.671659999999999
GTEx tissue expression atlas CTCF expression
ReMap ChIP-seq dataset list CTCF datasets
Motifs in JASPAR
MA0139.1 (CTCF; Homo sapiens)
PCM
ACGT
0147.0180.063.0210.0
0276.084.0261.079.0
03129.042.0277.052.0
0434.0428.018.020.0
051.0498.01.00.0
06350.03.0121.026.0
078.0326.0161.05.0
0849.0297.037.0117.0
09453.09.027.011.0
101.01.0496.02.0
11193.00.0306.01.0
1213.013.0294.0180.0
136.01.0492.01.0
1425.013.0430.032.0
1534.0438.06.022.0
16198.07.0292.03.0
1738.0281.0163.018.0
1848.0211.058.0183.0
19186.0134.0158.022.0
PWM
ACGT
01-0.9580.361-0.6730.514
02-0.49-0.3920.73-0.452
030.031-1.0670.789-0.86
04-1.271.222-1.868-1.77
05-3.9031.373-3.903-4.4
061.022-3.325-0.032-1.525
07-2.5840.9510.25-2.961
08-0.9180.858-1.189-0.065
091.279-2.484-1.489-2.311
10-3.903-3.9031.369-3.573
110.43-4.40.888-3.903
12-2.163-2.1630.8480.361
13-2.819-3.9031.361-3.903
14-1.561-2.1631.227-1.328
15-1.271.245-2.819-1.681
160.455-2.6940.841-3.325
17-1.1630.8030.263-1.868
18-0.9380.519-0.7540.377
190.3930.0690.232-1.681