Model info
| Transcription factor | Ctcf | ||||||||
| Model | CTCF_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbdCCRSYAGGKGGCGSbvb | ||||||||
| Best auROC (human) | 0.998 | ||||||||
| Best auROC (mouse) | 0.999 | ||||||||
| Peak sets in benchmark (human) | 502 | ||||||||
| Peak sets in benchmark (mouse) | 263 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | CTCF-like factors {2.3.3.50} | ||||||||
| MGI | MGI:109447 | ||||||||
| EntrezGene | GeneID:13018 (SSTAR profile) | ||||||||
| UniProt ID | CTCF_MOUSE | ||||||||
| UniProt AC | Q61164 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Ctcf expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 40.0 | 184.0 | 64.0 | 212.0 |
| 02 | 74.0 | 88.0 | 263.0 | 75.0 |
| 03 | 102.0 | 46.0 | 294.0 | 58.0 |
| 04 | 20.0 | 438.0 | 24.0 | 18.0 |
| 05 | 4.0 | 495.0 | 0.0 | 1.0 |
| 06 | 318.0 | 9.0 | 143.0 | 30.0 |
| 07 | 10.0 | 301.0 | 184.0 | 5.0 |
| 08 | 52.0 | 306.0 | 21.0 | 121.0 |
| 09 | 443.0 | 19.0 | 26.0 | 12.0 |
| 10 | 1.0 | 0.0 | 497.0 | 2.0 |
| 11 | 174.0 | 0.0 | 325.0 | 1.0 |
| 12 | 17.0 | 18.0 | 320.0 | 145.0 |
| 13 | 1.0 | 4.0 | 490.0 | 5.0 |
| 14 | 11.0 | 10.0 | 450.0 | 29.0 |
| 15 | 33.0 | 452.0 | 0.0 | 15.0 |
| 16 | 126.0 | 3.0 | 369.0 | 2.0 |
| 17 | 32.0 | 335.0 | 123.0 | 10.0 |
| 18 | 45.0 | 181.0 | 59.0 | 215.0 |
| 19 | 146.0 | 152.0 | 179.0 | 23.0 |
| 20 | 46.0 | 121.0 | 180.0 | 153.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.114 | 0.383 | -0.658 | 0.523 |
| 02 | -0.516 | -0.346 | 0.737 | -0.503 |
| 03 | -0.201 | -0.979 | 0.848 | -0.754 |
| 04 | -1.77 | 1.245 | -1.6 | -1.868 |
| 05 | -3.126 | 1.367 | -4.4 | -3.903 |
| 06 | 0.926 | -2.484 | 0.133 | -1.389 |
| 07 | -2.394 | 0.872 | 0.383 | -2.961 |
| 08 | -0.86 | 0.888 | -1.725 | -0.032 |
| 09 | 1.256 | -1.818 | -1.525 | -2.234 |
| 10 | -3.903 | -4.4 | 1.371 | -3.573 |
| 11 | 0.327 | -4.4 | 0.948 | -3.903 |
| 12 | -1.92 | -1.868 | 0.932 | 0.147 |
| 13 | -3.903 | -3.126 | 1.357 | -2.961 |
| 14 | -2.311 | -2.394 | 1.272 | -1.421 |
| 15 | -1.298 | 1.276 | -4.4 | -2.034 |
| 16 | 0.008 | -3.325 | 1.074 | -3.573 |
| 17 | -1.328 | 0.978 | -0.016 | -2.394 |
| 18 | -1.0 | 0.366 | -0.737 | 0.537 |
| 19 | 0.154 | 0.193 | 0.355 | -1.64 |
| 20 | -0.979 | -0.032 | 0.361 | 0.2 |