Model info
| Transcription factor | CUX1 (GeneCards) | ||||||||
| Model | CUX1_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 14 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vbRvndATYRRTbb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 97 | ||||||||
| TF family | HD-CUT factors {3.1.9} | ||||||||
| TF subfamily | CUX {3.1.9.2} | ||||||||
| HGNC | HGNC:2557 | ||||||||
| EntrezGene | GeneID:1523 (SSTAR profile) | ||||||||
| UniProt ID | CUX1_HUMAN | ||||||||
| UniProt AC | P39880 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | CUX1 expression | ||||||||
| ReMap ChIP-seq dataset list | CUX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 45.548 | 13.733 | 31.128 | 6.638 |
| 02 | 12.131 | 19.569 | 36.507 | 28.839 |
| 03 | 30.327 | 13.504 | 50.011 | 3.204 |
| 04 | 19.255 | 23.604 | 43.974 | 10.214 |
| 05 | 15.249 | 27.723 | 31.042 | 23.031 |
| 06 | 26.322 | 7.095 | 34.104 | 29.526 |
| 07 | 91.896 | 1.03 | 3.09 | 1.03 |
| 08 | 1.03 | 2.289 | 0.0 | 93.728 |
| 09 | 0.0 | 65.518 | 4.12 | 27.409 |
| 10 | 13.046 | 4.12 | 73.7 | 6.18 |
| 11 | 66.834 | 0.0 | 26.093 | 4.12 |
| 12 | 1.144 | 2.174 | 0.0 | 93.728 |
| 13 | 6.866 | 25.177 | 49.21 | 15.793 |
| 14 | 12.417 | 17.796 | 37.823 | 29.011 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.609 | -0.535 | 0.239 | -1.183 |
| 02 | -0.649 | -0.204 | 0.393 | 0.166 |
| 03 | 0.214 | -0.551 | 0.7 | -1.765 |
| 04 | -0.219 | -0.026 | 0.574 | -0.805 |
| 05 | -0.438 | 0.128 | 0.237 | -0.05 |
| 06 | 0.078 | -1.126 | 0.327 | 0.188 |
| 07 | 1.298 | -2.458 | -1.792 | -2.458 |
| 08 | -2.458 | -2.002 | -3.101 | 1.318 |
| 09 | -3.101 | 0.965 | -1.574 | 0.117 |
| 10 | -0.582 | -1.574 | 1.08 | -1.244 |
| 11 | 0.984 | -3.101 | 0.07 | -1.574 |
| 12 | -2.407 | -2.036 | -3.101 | 1.318 |
| 13 | -1.154 | 0.035 | 0.684 | -0.405 |
| 14 | -0.628 | -0.294 | 0.428 | 0.171 |