We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorCUX2
(GeneCards)
ModelCUX2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
D
Motif rank
0
ConsensushRRTCAATvvv
Best auROC (human)
Best auROC (mouse)0.867
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)5
Aligned words496
TF familyHD-CUT factors {3.1.9}
TF subfamilyCUX {3.1.9.2}
HGNCHGNC:19347
EntrezGeneGeneID:23316
(SSTAR profile)
UniProt IDCUX2_HUMAN
UniProt ACO14529
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.733105
0.0005 6.423265
0.0001 7.8213550000000005
GTEx tissue expression atlas CUX2 expression
ReMap ChIP-seq dataset list CUX2 datasets
Motifs in JASPAR
MA0755.1 (CUX2; Homo sapiens)
PCM
ACGT
01229.093.050.0117.0
02280.017.0162.030.0
03351.041.076.021.0
0438.025.023.0403.0
055.0458.022.04.0
06407.032.039.011.0
07387.083.011.08.0
0836.03.047.0403.0
09173.089.0198.029.0
10259.082.098.050.0
11216.0103.093.077.0
PWM
ACGT
010.622-0.27-0.876-0.043
020.822-1.8980.278-1.367
031.047-1.068-0.468-1.703
04-1.141-1.54-1.6181.184
05-2.9391.312-1.66-3.105
061.194-1.306-1.116-2.289
071.144-0.381-2.289-2.562
08-1.193-3.304-0.9361.184
090.344-0.3130.477-1.399
100.744-0.393-0.218-0.876
110.564-0.169-0.27-0.455