We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorCux2
ModelCUX2_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
C
Motif rank
0
ConsensusddnhAATCAATvvh
Best auROC (human)
Best auROC (mouse)0.876
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)5
Aligned words608
TF familyHD-CUT factors {3.1.9}
TF subfamilyCUX {3.1.9.2}
MGIMGI:107321
EntrezGeneGeneID:13048
(SSTAR profile)
UniProt IDCUX2_MOUSE
UniProt ACP70298
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.891110000000001
0.0005 11.845515
0.0001 16.208185
GTEx tissue expression atlas Cux2 expression
Motifs in JASPAR
MA0755.1 (CUX2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01114.022.050.039.027.09.08.08.044.09.020.012.024.017.060.011.0
0239.022.043.0105.020.015.012.010.073.012.026.027.020.019.017.014.0
0392.020.013.027.033.013.05.017.044.020.016.018.044.084.010.018.0
04171.03.035.04.0120.05.012.00.017.00.025.02.059.02.018.01.0
05352.00.07.08.010.00.00.00.087.00.02.01.06.00.01.00.0
069.05.03.0438.00.00.00.00.00.00.00.010.01.00.00.08.0
072.08.00.00.02.02.00.01.00.03.00.00.05.0450.01.00.0
088.00.00.01.0416.05.035.07.01.00.00.00.01.00.00.00.0
09368.048.01.09.03.01.00.01.033.01.00.01.08.00.00.00.0
1010.06.05.0391.02.00.022.026.01.00.00.00.00.00.04.07.0
111.07.03.02.04.01.00.01.03.00.027.01.0196.0101.0101.026.0
12107.025.044.028.078.018.02.011.074.022.020.015.08.08.06.08.0
13149.037.042.039.029.017.05.022.023.018.014.017.012.010.015.025.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
011.338-0.2930.5180.272-0.092-1.162-1.275-1.2750.391-1.162-0.387-0.885-0.208-0.5460.699-0.969
020.272-0.2930.3691.256-0.387-0.668-0.885-1.0610.894-0.885-0.129-0.092-0.387-0.437-0.546-0.735
031.124-0.387-0.807-0.0920.107-0.807-1.718-0.5460.391-0.387-0.605-0.490.3911.034-1.061-0.49
041.742-2.1820.165-1.9231.389-1.718-0.885-4.356-0.546-4.356-0.167-2.5320.683-2.532-0.49-3.076
052.463-4.356-1.402-1.275-1.061-4.356-4.356-4.3561.069-4.356-2.532-3.076-1.548-4.356-3.076-4.356
06-1.162-1.718-2.1822.682-4.356-4.356-4.356-4.356-4.356-4.356-4.356-1.061-3.076-4.356-4.356-1.275
07-2.532-1.275-4.356-4.356-2.532-2.532-4.356-3.076-4.356-2.182-4.356-4.356-1.7182.709-3.076-4.356
08-1.275-4.356-4.356-3.0762.63-1.7180.165-1.402-3.076-4.356-4.356-4.356-3.076-4.356-4.356-4.356
092.5080.478-3.076-1.162-2.182-3.076-4.356-3.0760.107-3.076-4.356-3.076-1.275-4.356-4.356-4.356
10-1.061-1.548-1.7182.568-2.532-4.356-0.293-0.129-3.076-4.356-4.356-4.356-4.356-4.356-1.923-1.402
11-3.076-1.402-2.182-2.532-1.923-3.076-4.356-3.076-2.182-4.356-0.092-3.0761.8791.2171.217-0.129
121.275-0.1670.391-0.0560.96-0.49-2.532-0.9690.908-0.293-0.387-0.668-1.275-1.275-1.548-1.275
131.6050.220.3450.272-0.021-0.546-1.718-0.293-0.249-0.49-0.735-0.546-0.885-1.061-0.668-0.167